Glyma12g10370 - SoyBase

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Report for Sequence Feature Glyma12g10370

Feature Type:	gene_model
Chromosome:	Gm12
Start:	8280307
stop:	8281631
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g10370

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G05100	AT	Annotation by Michelle Graham. TAIR10: mitogen-activated protein kinase kinase kinase 18 \| chr1:1469679-1470698 FORWARD LENGTH=339	SoyBase	E_val: 3.00E-104	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
KOG0198	KOG	MEKK and related serine/threonine protein kinases	JGI		ISS
PTHR24361	Panther	MITOGEN-ACTIVATED KINASE KINASE KINASE	JGI		ISS
PTHR24361:SF58	Panther		JGI		ISS
PF00069	PFAM	Protein kinase domain	JGI		ISS
UniRef100_G7JEQ9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: MAP kinase kinase kinase SSK2 n=1 Tax=Medicago truncatula RepID=G7JEQ9_MEDTR	SoyBase	E_val: 9.00E-160	ISS
UniRef100_I1LRP0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LRP0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma12g10370

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g10370

Paralog	Evidence	Comments
Glyma06g46410	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g10370 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g097200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g10370

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma12g10370

Limit To All Plant Sequences

>Glyma12g10370.1   sequence type=CDS   gene model=Glyma12g10370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGTGGCATAGAGGCCACACCATAGGCCAAGGCTCATCAGCCACCGTCTCCACCGCCACGTGCTGCGGTGGTGTCTTGGCTGTCAAGTCATCGGAGCTGCCACAATCAGAGCCTCTGAAAAAGGAGCAGAAAATTTTGTCCTCTCTAAGTAGTCCTTATGTGGTTGCATACAAAGGGTGTGACATTACCATGGAGAACAACAAGCTCTTGTTCAACCTCTTCATGGAGTACATGCCCTTCGGCACGCTTGCTCAGGCGACTCGCCGGTGCGATGGTCGGCTCCAGGAGCCGGCCATTGCATGCTACACAAGGCAAATCGTGCAGGGGCTGGAGTACCTGCATTCAAAAGGGTTGGTGCATTGTGACATCAAGGGTGCCAACATCTTAATTGGTGAAAATGGGGCCAAAATTGGTGACTTGGGGTGTGCCAAGAGTGCGGCGGATTCCACGGGGGCGATCGGCGGCACACCGATGTTCATGGCGCCGGAGGTGGCGCGTGGGGAGGAGCAAGGGTGTGCTAGTGACATTTGGTCACTTGGGTGTACTGTGATTGAAATGGTAACCGGTGGTGCACCATGGCCTAATGTGGAAGACCCTTTTTCAGTGCTTTATCACATTGCATATTCTAGTGAAGTGCCCGAGATTCCTTGTTTTCTATCCAAAGAAGCAAAGGATTTCTTGGGGAAGTGCTTGAGGAGGAATCCACAAGAGAGGTGGAAGGCTAGTGAACTATTGAAGCATCCATTTATTGAGAAATTGTGTTTCAATAAGGAGGTTTTGGAGTCTAATACAAGTTCCCCAACAAGTGTTCTTGAGCAAGGCTATTGGAGTTGTGTGGAAGAGTCAGAGAGTTTAGGCGATTTGATTCACAAAACAAGAAAGTTTGAAACTTTGGCTGCCGGGAGGGTCAGAATGTTGGCTCTGTCTTCTGGGGTGCCCTATTGGGCAAGACATGATGATGAGAATTGGATCACAGCAAGAGGGAATGGGGTTGAAGGTTTTGCCAATTGTGGGGCAGAGACAGCTTCTTCTGCCAGTCATGGGTTGTCTCACTAG

Predicted protein sequences of Glyma12g10370

Limit To All Plant Sequences

>Glyma12g10370.1   sequence type=predicted peptide   gene model=Glyma12g10370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEWHRGHTIGQGSSATVSTATCCGGVLAVKSSELPQSEPLKKEQKILSSLSSPYVVAYKGCDITMENNKLLFNLFMEYMPFGTLAQATRRCDGRLQEPAIACYTRQIVQGLEYLHSKGLVHCDIKGANILIGENGAKIGDLGCAKSAADSTGAIGGTPMFMAPEVARGEEQGCASDIWSLGCTVIEMVTGGAPWPNVEDPFSVLYHIAYSSEVPEIPCFLSKEAKDFLGKCLRRNPQERWKASELLKHPFIEKLCFNKEVLESNTSSPTSVLEQGYWSCVEESESLGDLIHKTRKFETLAAGRVRMLALSSGVPYWARHDDENWITARGNGVEGFANCGAETASSASHGLSH*

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