SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G32590 | AT | Annotation by Michelle Graham. TAIR10: LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Barren (InterPro:IPR008418); Has 467 Blast hits to 447 proteins in 202 species: Archae - 0; Bacteria - 4; Metazoa - 147; Fungi - 168; Plants - 39; Viruses - 1; Other Eukaryotes - 108 (source: NCBI BLink). | chr2:13829420-13833209 REVERSE LENGTH=671 | SoyBase | E_val: 0 | ISS |
| GO:0000226 | GO-bp | Annotation by Michelle Graham. GO Biological Process: microtubule cytoskeleton organization | SoyBase | N/A | ISS |
| GO:0000911 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cytokinesis by cell plate formation | SoyBase | N/A | ISS |
| GO:0006260 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA replication | SoyBase | N/A | ISS |
| GO:0006270 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA replication initiation | SoyBase | N/A | ISS |
| GO:0006275 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of DNA replication | SoyBase | N/A | ISS |
| GO:0006306 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA methylation | SoyBase | N/A | ISS |
| GO:0006342 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chromatin silencing | SoyBase | N/A | ISS |
| GO:0006346 | GO-bp | Annotation by Michelle Graham. GO Biological Process: methylation-dependent chromatin silencing | SoyBase | N/A | ISS |
| GO:0008283 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell proliferation | SoyBase | N/A | ISS |
| GO:0009909 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of flower development | SoyBase | N/A | ISS |
| GO:0010389 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of G2/M transition of mitotic cell cycle | SoyBase | N/A | ISS |
| GO:0016458 | GO-bp | Annotation by Michelle Graham. GO Biological Process: gene silencing | SoyBase | N/A | ISS |
| GO:0019722 | GO-bp | Annotation by Michelle Graham. GO Biological Process: calcium-mediated signaling | SoyBase | N/A | ISS |
| GO:0031047 | GO-bp | Annotation by Michelle Graham. GO Biological Process: gene silencing by RNA | SoyBase | N/A | ISS |
| GO:0031048 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chromatin silencing by small RNA | SoyBase | N/A | ISS |
| GO:0034968 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone lysine methylation | SoyBase | N/A | ISS |
| GO:0051322 | GO-bp | Annotation by Michelle Graham. GO Biological Process: anaphase | SoyBase | N/A | ISS |
| GO:0051567 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone H3-K9 methylation | SoyBase | N/A | ISS |
| GO:0051726 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of cell cycle | SoyBase | N/A | ISS |
| GO:0000793 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: condensed chromosome | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| KOG2328 | KOG | Chromosome condensation complex Condensin, subunit H | JGI | ISS | |
| PTHR13108 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR13108:SF9 | Panther | gb def: Hypothetical protein At2g32590 | JGI | ISS | |
| PF05786 | PFAM | Barren protein | JGI | ISS | |
| UniRef100_I1LRN4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Condensin complex subunit 2 n=1 Tax=Glycine max RepID=I1LRN4_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233C757 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233C757 related cluster n=1 Tax=unknown RepID=UPI000233C757 | SoyBase | E_val: 0 | ISS |
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Glyma12g10280 not represented in the dataset |
Glyma12g10280 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma06g46480 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.12g096700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma12g10280.1 sequence type=CDS gene model=Glyma12g10280 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGGAAACCCTAAGCCCCAACCCCACGATGGATCAGAAGCAGAGGCTCCGCATCCTGTCCCCGACCAGCCCCTTCATCCTGGGCTCCAACGACGACAAGCTCGAACGCGCCCAGGCACGCGACGCACGCGCCACCGCCATCCGCCGCAAGAGCCTCGCCCTCAATCAGCCCCTTCAGCCCAACTCCGATCCCTGCCTCAACAAACAGCAGATCATCGACTTGTTCCAAAACTGCATCAAACTCGCCAGCGAAAACAAAATTAATCAGAAAAATACGTGGGAGTTGAACCTGATTGACCACCTCACAGATATCATCAAGGCGGAAGAAGAAAATGATGCGGAGACTAATTTTCAAAAGGCAAGCTGCACTCTTGAGGCTGGAGTCAAAATTTATTCATTAAGGGTGGATTCAGTGCATTCTGAGGCATATAAAGTTCTTGGTGGGATGAATAGAGCAGGCCAAGAAGCTGAGGAAGATACTACCCTGAATGGTGTTAATATTGAAAGTGGACAAGTAGAAAGCAGGAAAGAAACGAGCAAAAAGTTGTCACCTTTGTCAACATTGGAATCATCTTTTGAGGCACTTAATGTAAAGAAGTTCGATGCTGCATTTGTCGTGGATCCTCTCTATCGCCAAACAACAGCAAAATTCGATGAAGGTGGAGCCAAGGGTCTTTTAATGAATAATCTCGGTGTATATGGTGACTGTAGGGTGCTCTTTGATTCACAAGAAGTTCCTGCTAAGTGTATGGCAAGCCAAAATCAATCTGATATTTCAGATACTATTGATCTTTCCTTTGCCAAAGATTGTATTGATCAAATGGTGTTGGACATGCGTGTAAAGGATGAAATTTCTCCAAGTCTCAGGACTATAGTAAACCAATTTGATGAAAGTAACAGAAGACCCGCTGATATTCAACTTCAAGGCCAGAATTCAGCTGAAGATCTTGACAATGCTGATAATAATGAAAATGGTTTTTACAGAGAAGAATATGAGAACTGCATGGCCTGGAGTGATGATCGTGATGACCAAACAGTTGTTGCCGATCCAGGTTATAATGATGCAGATCCAAGTTTTCCCAGTTACCCTCAGGACAATGATGAGCCATTTCCTTCCCCAGAAATTGATATGGATGGCAGATTTGAAAATGTTGACGGGTATTTATTTTTGAGTCTGGGTTTTAGTTCAAAACAAAATGCATGGGCAGGGCCTGATCATTGGAAGTATCGAAAATCCAAAGTCTCAGAGGTTCATCCTACTTCTGAAGATGGGTCGACCCTAAAAAGTAGACAGCCAAAGAGTAAGAGACAAACTGAAGTTGATTTAAATTTCACAAATTCTCTTGAGAAAAAAATGCTAGATACATTTTCTCCTCCCAAGAATCCCAAATTGTTACTGCTTCCTGAAAGCAGATTACCTTGCAATACAAAACTTCCTGAGGATTGTCACTATCAGCCAGAAGATCTTGTCAAGTTATTTCTTCTGTCTAATGTAAAGTGTCTCGGGAGGAAGGCAAACAGGTTCTCAGATGGATCTAGAGAACAATCCGATGAATATGAATCATTCCCTTCGTGGGATAATGGAAGTGTTTGTGGGGATGACGCTGGTGACTACGGAGGTGATCTTCATGGTGACATGGAGGACACCGACACTCTTGTTACTCAGCCTCGTCAGGTCAGTAAAATTGAAGTCCAGTATGACAAGACTTCCAAACAAGTCGATGTTCATGCACTAAAAATTACTCTTTGGGACCATGTTCAAGAATCTGTTAAACTTCCTTTAGAGGGTCAAAAAGATACCTTATCTTTCAGGAATATATTAGCCAACTTTCCTAGCGAATGCAATGCTGCTGCAACAATTAGTGACATCTCTCCTCATCTGTGCTTCATATGTCTATTGCATTTGGCAAACGAGAAAGGATTGAGCATTCAAAACTCCCCTAATTTGGATGATCTTGCCATACGGTTTCCACAAGTTGCTGATTCTATGAGGGGAACAGTTTAG
>Glyma12g10280.1 sequence type=predicted peptide gene model=Glyma12g10280 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAETLSPNPTMDQKQRLRILSPTSPFILGSNDDKLERAQARDARATAIRRKSLALNQPLQPNSDPCLNKQQIIDLFQNCIKLASENKINQKNTWELNLIDHLTDIIKAEEENDAETNFQKASCTLEAGVKIYSLRVDSVHSEAYKVLGGMNRAGQEAEEDTTLNGVNIESGQVESRKETSKKLSPLSTLESSFEALNVKKFDAAFVVDPLYRQTTAKFDEGGAKGLLMNNLGVYGDCRVLFDSQEVPAKCMASQNQSDISDTIDLSFAKDCIDQMVLDMRVKDEISPSLRTIVNQFDESNRRPADIQLQGQNSAEDLDNADNNENGFYREEYENCMAWSDDRDDQTVVADPGYNDADPSFPSYPQDNDEPFPSPEIDMDGRFENVDGYLFLSLGFSSKQNAWAGPDHWKYRKSKVSEVHPTSEDGSTLKSRQPKSKRQTEVDLNFTNSLEKKMLDTFSPPKNPKLLLLPESRLPCNTKLPEDCHYQPEDLVKLFLLSNVKCLGRKANRFSDGSREQSDEYESFPSWDNGSVCGDDAGDYGGDLHGDMEDTDTLVTQPRQVSKIEVQYDKTSKQVDVHALKITLWDHVQESVKLPLEGQKDTLSFRNILANFPSECNAAATISDISPHLCFICLLHLANEKGLSIQNSPNLDDLAIRFPQVADSMRGTV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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