SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G21990 | AT | Annotation by Michelle Graham. TAIR10: Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:7273395-7276318 FORWARD LENGTH=554 | SoyBase | E_val: 0 | ISS |
| GO:0000413 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein peptidyl-prolyl isomerization | SoyBase | N/A | ISS |
| GO:0018208 | GO-bp | Annotation by Michelle Graham. GO Biological Process: peptidyl-proline modification | SoyBase | N/A | ISS |
| GO:0046967 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cytosol to ER transport | SoyBase | N/A | ISS |
| GO:0005789 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum membrane | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0009707 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast outer membrane | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0003755 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: peptidyl-prolyl cis-trans isomerase activity | SoyBase | N/A | ISS |
| GO:0005528 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: FK506 binding | SoyBase | N/A | ISS |
| PTHR10516 | Panther | FK506 BINDING PROTEIN | JGI | ISS | |
| PTHR10516:SF27 | Panther | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE | JGI | ISS | |
| PF00515 | PFAM | Tetratricopeptide repeat | JGI | ISS | |
| UniRef100_B9RQ36 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Fk506 binding protein, putative n=1 Tax=Ricinus communis RepID=B9RQ36_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1LRN2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LRN2_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma12g10270 not represented in the dataset |
Glyma12g10270 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma06g46490 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.12g096600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma12g10270.2 sequence type=transcript gene model=Glyma12g10270 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TCGACTCTTGTTTTGTTTGTTAGGGGTTCTCTCACATTCCTGTTCCATTCCTATTTTACTTTTAATTTTTCCTCTTTTCAGGTTTGGCAGGCGGCACCTCCAAATCGGACCCCTTCTTCCTCTTTTCTTTCCAACAATTCCCCTGTTCCTCAATTTCCCAACACAACACCTTCTCCTCAAGTTTCCCAAAACACACATAACTAGGAAACTTTCCTTAACCTCTGCAACTTTCTCCAATTCTATTGAACAAAAACAAAAGCATCCCCCTTTTCCCTCTCATCATTGGGAATCGTCTCAAGCTTCGTTTTTGACGTGCTGGGGTTGCTTAGATTTCAATTGGGTATCGAGAATGTTCAACGGTATGATGGATCCCGATTTGATGAAGATCGCTCAGGAGCAGATGAGTCGCATGTCACCCGCTGAGTTGGCTCGGATCCAACAACAGATGATGTCTAATCCAGAGCTGATGAGGATGGCCTCGGAGAGCATGAAGAACATGAGTGCTGAAGACTTTAAACTTGCTGCAGAGCAATTAAAGCATACCCGTCCGGAAGAAATGGCCGAGATTGGTGAGAAGGTGGCTAATGCGAGTCCTGAGGAAGTGGCAGCGATGCGATCCCGGGTTGATGCCCAGATCAAATATCAGTTGAGTGCGGCTGAGATGTTGAAGAAGCAGGGAAATGATCTTCATAATCAAGGAAGGTACAATGATGCTTTGAAGAAGTATATGCTTGCTAAGGAAAACATTAAAGAGGTACCATCTTTCCAGAGTAGAAAGCTTCTTTTGGCATGCTCTCTGAACTTGATGTCCTGTTACTTGAAGACAAGCCAGTATAATGAATGCATAAAAGAAGGTTCTGAGGTTTTGGCATATGATGCGAAGAACCTTAAGGCTCTTTATCGAAGAGGTCAAGCTTATAAGGAACTGGGTCTACTAAAAGATGCTGTTTCTGATCTGAGCATGGCACTTGAAGTGTCCCCTGATGATGATACAATTACAGAGCTTTTACGGGATACCAAGGAAAAATTGGCAATGGAAGGTGGTGAGCATGCACCTAGAAGAATAGTAACTGAAGAAATAACTGAAGTTGAGGATGTTCCTTCTGGAAGCTCTTTGAAACAATCGGTGGTTCAACTAAAAAAATCTGGTGACTCCTCTAAGAGTTACAGTACAGCCAACAATGGAATTCCAAAAACAAAGACAGACAGTTTAGATGCATTGAAAAAAGATCCTGAAGCTGTCAGATCATTCCAAAACTTTATTTCAAATACCGATCCTGCCACACTGGCTTCTTTGAATGCTGGACAATTCAAAGATGTGTCTCCAGATATGATTAAAACTACCTCTGATATGATGTTCACATCCATGGTTAAAAATATGAGCCCGGAAATGATGGCTAACATGGGTGAACAATTTGGTGTTAAGCTTTCACCAGAAGAAGCTGCAAAAGCTCAGCAAGCCATGTCATCCTTATCACCGGAGAGCTTGGATAAAATGATGCTTTGGGCAGACAGGATTCAAAGAGGAGTTGAATCTGCGAGAAAGACAAAGAACTGGCTGCTAGGGAAACCTGGCATGATCTTTGCTATATTAATGCTCATTTTGGCTGTCATTCTTCACCGGTTAGGCTTCATTGGTGGCTAGAGTAAGGGGCAAACATTATGAGATTCCTTGGGCATTCAAACTCAGGCATAACCTTCTTGTGTGATGAGAATATGAGATGATTGAATGTATTGTCTCAGCCAAGAGACATTGGAGAGAGGAGGGGACATATTATTGGTTTTCTGGAAAGCAATGCCAAAATGGCTTCTCATCAGATATGTCCAAATTGTGGATGTGATTGGCACTTTTTTTTTTTGTTGTAACATATTAGCTTTTGAGTTGTTTGCCATTTAGCACTTGGAAGGACCCTACCATTCAATAAATTTGTAACCTTTTGTCATTCTTATACCCTAATCCTAATGTAGCATTGGTCTGGTGCGTTATTATTTATAAAATTTACACGATTCCCTTTTATATGCTTTCCTCACTCACATGTAGAACTAATAATTTGAGGATATAGTTTTATCCGAGTCTTAATGTGATATGCTTTATCTAGTTA
>Glyma12g10270.1 sequence type=CDS gene model=Glyma12g10270 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTCAACGGTATGATGGATCCCGATTTGATGAAGATCGCTCAGGAGCAGATGAGTCGCATGTCACCCGCTGAGTTGGCTCGGATCCAACAACAGATGATGTCTAATCCAGAGCTGATGAGGATGGCCTCGGAGAGCATGAAGAACATGAGTGCTGAAGACTTTAAACTTGCTGCAGAGCAATTAAAGCATACCCGTCCGGAAGAAATGGCCGAGATTGGTGAGAAGGTGGCTAATGCGAGTCCTGAGGAAGTGGCAGCGATGCGATCCCGGGTTGATGCCCAGATCAAATATCAGTTGAGTGCGGCTGAGATGTTGAAGAAGCAGGGAAATGATCTTCATAATCAAGGAAGGTACAATGATGCTTTGAAGAAGTATATGCTTGCTAAGGAAAACATTAAAGAGGTACCATCTTTCCAGAGTAGAAAGCTTCTTTTGGCATGCTCTCTGAACTTGATGTCCTGTTACTTGAAGACAAGCCAGTATAATGAATGCATAAAAGAAGGTTCTGAGGTTTTGGCATATGATGCGAAGAACCTTAAGGCTCTTTATCGAAGAGGTCAAGCTTATAAGGAACTGGGTCTACTAAAAGATGCTGTTTCTGATCTGAGCATGGCACTTGAAGTGTCCCCTGATGATGATACAATTACAGAGCTTTTACGGGATACCAAGGAAAAATTGGCAATGGAAGGTGGTGAGCATGCACCTAGAAGAATAGTAACTGAAGAAATAACTGAAGTTGAGGATGTTCCTTCTGGAAGCTCTTTGAAACAATCGGTGGTTCAACTAAAAAAATCTGGTGACTCCTCTAAGAGTTACAGTACAGCCAACAATGGAATTCCAAAAACAAAGACAGACAGTTTAGATGCATTGAAAAAAGATCCTGAAGCTGTCAGATCATTCCAAAACTTTATTTCAAATACCGATCCTGCCACACTGGCTTCTTTGAATGCTGGACAATTCAAAGATGTGTCTCCAGATATGATTAAAACTACCTCTGATATGGTTAGTAAAATGTCACCTGAGGAACTTCAAAGAATGCTTGACATGGCTTCTTCATTTCAAGGGGATAATCCAATTTTTAGAGGAGGTTCCCCTGATTCTTCTTTCAACCCTGGATCAATGCCTCCAAATGTGACACCTGATATGTTTAAAGCAGCAAGTGATATGATTAGTAAAATGCCAGCAGATGACCTTAAGAGGATGTTTGAAATGGCATCCTCACTGAAAGGGAAAGAATCTACTCCATTAGCAGCAGCAGTAGATGAGAATGAAAGAAATGTTTCCCGGTCAAACTTACCATCATCAAGTACTAATGGAACTACTGCTTTTGGAGAATCAAGTTCTCATAATGTGTTTTCAAATATGAGAAATGCTTCTCAGTCAAACTTCCCTTCCTCAAGTGCCAATCTCCAAGAACAGATGAGAAACCAGATGAAAGATCCAGCTATGCGGAAGATGTTCACATCCATGGTTAAAAATATGAGCCCGGAAATGATGGCTAACATGGGTGAACAATTTGGTGTTAAGCTTTCACCAGAAGAAGCTGCAAAAGCTCAGCAAGCCATGTCATCCTTATCACCGGAGAGCTTGGATAAAATGATGCTTTGGGCAGACAGGATTCAAAGAGGAGTTGAATCTGCGAGAAAGACAAAGAACTGGCTGCTAGGGAAACCTGGCATGATCTTTGCTATATTAATGCTCATTTTGGCTGTCATTCTTCACCGGTTAGGCTTCATTGGTGGCTAG >Glyma12g10270.2 sequence type=CDS gene model=Glyma12g10270 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTCAACGGTATGATGGATCCCGATTTGATGAAGATCGCTCAGGAGCAGATGAGTCGCATGTCACCCGCTGAGTTGGCTCGGATCCAACAACAGATGATGTCTAATCCAGAGCTGATGAGGATGGCCTCGGAGAGCATGAAGAACATGAGTGCTGAAGACTTTAAACTTGCTGCAGAGCAATTAAAGCATACCCGTCCGGAAGAAATGGCCGAGATTGGTGAGAAGGTGGCTAATGCGAGTCCTGAGGAAGTGGCAGCGATGCGATCCCGGGTTGATGCCCAGATCAAATATCAGTTGAGTGCGGCTGAGATGTTGAAGAAGCAGGGAAATGATCTTCATAATCAAGGAAGGTACAATGATGCTTTGAAGAAGTATATGCTTGCTAAGGAAAACATTAAAGAGGTACCATCTTTCCAGAGTAGAAAGCTTCTTTTGGCATGCTCTCTGAACTTGATGTCCTGTTACTTGAAGACAAGCCAGTATAATGAATGCATAAAAGAAGGTTCTGAGGTTTTGGCATATGATGCGAAGAACCTTAAGGCTCTTTATCGAAGAGGTCAAGCTTATAAGGAACTGGGTCTACTAAAAGATGCTGTTTCTGATCTGAGCATGGCACTTGAAGTGTCCCCTGATGATGATACAATTACAGAGCTTTTACGGGATACCAAGGAAAAATTGGCAATGGAAGGTGGTGAGCATGCACCTAGAAGAATAGTAACTGAAGAAATAACTGAAGTTGAGGATGTTCCTTCTGGAAGCTCTTTGAAACAATCGGTGGTTCAACTAAAAAAATCTGGTGACTCCTCTAAGAGTTACAGTACAGCCAACAATGGAATTCCAAAAACAAAGACAGACAGTTTAGATGCATTGAAAAAAGATCCTGAAGCTGTCAGATCATTCCAAAACTTTATTTCAAATACCGATCCTGCCACACTGGCTTCTTTGAATGCTGGACAATTCAAAGATGTGTCTCCAGATATGATTAAAACTACCTCTGATATGATGTTCACATCCATGGTTAAAAATATGAGCCCGGAAATGATGGCTAACATGGGTGAACAATTTGGTGTTAAGCTTTCACCAGAAGAAGCTGCAAAAGCTCAGCAAGCCATGTCATCCTTATCACCGGAGAGCTTGGATAAAATGATGCTTTGGGCAGACAGGATTCAAAGAGGAGTTGAATCTGCGAGAAAGACAAAGAACTGGCTGCTAGGGAAACCTGGCATGATCTTTGCTATATTAATGCTCATTTTGGCTGTCATTCTTCACCGGTTAGGCTTCATTGGTGGCTAG
>Glyma12g10270.1 sequence type=predicted peptide gene model=Glyma12g10270 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MFNGMMDPDLMKIAQEQMSRMSPAELARIQQQMMSNPELMRMASESMKNMSAEDFKLAAEQLKHTRPEEMAEIGEKVANASPEEVAAMRSRVDAQIKYQLSAAEMLKKQGNDLHNQGRYNDALKKYMLAKENIKEVPSFQSRKLLLACSLNLMSCYLKTSQYNECIKEGSEVLAYDAKNLKALYRRGQAYKELGLLKDAVSDLSMALEVSPDDDTITELLRDTKEKLAMEGGEHAPRRIVTEEITEVEDVPSGSSLKQSVVQLKKSGDSSKSYSTANNGIPKTKTDSLDALKKDPEAVRSFQNFISNTDPATLASLNAGQFKDVSPDMIKTTSDMVSKMSPEELQRMLDMASSFQGDNPIFRGGSPDSSFNPGSMPPNVTPDMFKAASDMISKMPADDLKRMFEMASSLKGKESTPLAAAVDENERNVSRSNLPSSSTNGTTAFGESSSHNVFSNMRNASQSNFPSSSANLQEQMRNQMKDPAMRKMFTSMVKNMSPEMMANMGEQFGVKLSPEEAAKAQQAMSSLSPESLDKMMLWADRIQRGVESARKTKNWLLGKPGMIFAILMLILAVILHRLGFIGG* >Glyma12g10270.2 sequence type=predicted peptide gene model=Glyma12g10270 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MFNGMMDPDLMKIAQEQMSRMSPAELARIQQQMMSNPELMRMASESMKNMSAEDFKLAAEQLKHTRPEEMAEIGEKVANASPEEVAAMRSRVDAQIKYQLSAAEMLKKQGNDLHNQGRYNDALKKYMLAKENIKEVPSFQSRKLLLACSLNLMSCYLKTSQYNECIKEGSEVLAYDAKNLKALYRRGQAYKELGLLKDAVSDLSMALEVSPDDDTITELLRDTKEKLAMEGGEHAPRRIVTEEITEVEDVPSGSSLKQSVVQLKKSGDSSKSYSTANNGIPKTKTDSLDALKKDPEAVRSFQNFISNTDPATLASLNAGQFKDVSPDMIKTTSDMMFTSMVKNMSPEMMANMGEQFGVKLSPEEAAKAQQAMSSLSPESLDKMMLWADRIQRGVESARKTKNWLLGKPGMIFAILMLILAVILHRLGFIGG*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
