Glyma12g10140 - SoyBase

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Report for Sequence Feature Glyma12g10140

Feature Type:	gene_model
Chromosome:	Gm12
Start:	7978858
stop:	7989544
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g10140

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G44150	AT	Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11800.1); Has 76 Blast hits to 75 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). \| chr3:15887617-15888728 FORWARD LENGTH=246	SoyBase	E_val: 1.00E-132	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR21454	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR21454:SF1	Panther	SUBFAMILY NOT NAMED	JGI		ISS
UniRef100_C6TJ85	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TJ85_SOYBN	SoyBase	E_val: 5.00E-176	ISS
UniRef100_Q2HPL4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Expp1 protein n=1 Tax=Solanum tuberosum RepID=Q2HPL4_SOLTU	SoyBase	E_val: 6.00E-126	ISS

Expression Patterns of Glyma12g10140

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma12g10140 not represented in the dataset	Glyma12g10140 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g10140

Paralog	Evidence	Comments
Glyma11g18070	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g10140 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g095500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g10140

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma12g10140

Limit To All Plant Sequences

>Glyma12g10140.2   sequence type=transcript   gene model=Glyma12g10140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACTAGTACAATTCCCACTCACAAAGTTTGTAACTCTACACAGGATAAACCTGCCACACCTCATTAGTAGTAGCCAGTAGATTCAAAGTTGAGAGAAACAAACAAACAAAACAAAGCCAAGCATCTCCCAACACACCATCATCATCATCATCATCAAAGCCAAGCACAACAATGGCACTCAAAAGGGCATCGTGGTTGCTGCTGCTGCCACTGTTATCTGCAGTTGCTGCTGCTGCCACCAACACCAACAGTGTGTACCATCCTTGTTCTGATGCCAGGATTCAGAGATCTGATGGCTTCACTTTTGGCATTGCCTTCAGTTCCAGGGACTCTTTCTTCTACAACCAGAACCAGTCCCTCCAGCTCTCTCCCTGTGACCGACGCCTCTCTCTCTCTTCCTCCAACGCTCAGCTTGCTCTCTTCCGTCCCAGAGTTGATGAGATCTCTCTCCTCACCATCAACACCTCTAGTTTCTTCCCTGATAACTACGGTGGATATATGGTGGCATTTGCGGGAAAGAAATATGCTGCACGTTCTCCACTTGCGTTTGTCGCAAACAGCACATACACCGTGACAAGTTTTACACTGGTGCTAGAGTTTCAGAGGGGTAGGCTGCAGAACTTTTACCGGAAGACAGACGGTTGTTCTTCAATTATTTCACTATATATCTTACTAATTGTTAAATACTAA

>Glyma12g10140.3   sequence type=transcript   gene model=Glyma12g10140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACTAGTACAATTCCCACTCACAAAGTTTGTAACTCTACACAGGATAAACCTGCCACACCTCATTAGTAGTAGCCAGTAGATTCAAAGTTGAGAGAAACAAACAAACAAAACAAAGCCAAGCATCTCCCAACACACCATCATCATCATCATCATCAAAGCCAAGCACAACAATGGCACTCAAAAGGGCATCGTGGTTGCTGCTGCTGCCACTGTTATCTGCAGTTGCTGCTGCTGCCACCAACACCAACAGTGTGTACCATCCTTGTTCTGATGCCAGGATTCAGAGATCTGATGGCTTCACTTTTGGCATTGCCTTCAGTTCCAGGGACTCTTTCTTCTACAACCAGAACCAGTCCCTCCAGCTCTCTCCCTGTGACCGACGCCTCTCTCTCTCTTCCTCCAACGCTCAGCTTGCTCTCTTCCGTCCCAGAGTTGATGAGATCTCTCTCCTCACCATCAACACCTCTAGTTTCTTCCCTGATAACTACGGTGGATATATGGTGGCATTTGCGGGAAAGAAATATGCTGCACGTTCTCCACTTGCGTTTGTCGCAAACAGCACATACACCGTGACAAGTTTTACACTGGTAAGAGTTGTGAATCATGGACCTGATGAGTTGAGTTTTTGGTCTGTTATTGAAAGGCTTGGTTGGAGTTTCCATTTGATTAGGTGCTAGAGTTTCAGAGGGGTAGGCTGCATAACTTGTACTGGAAGAGAGACGGCTGTTCTTCATGCAAGGGGAAATCGAACTTGGTATGCCTCAACAAACAAGATTGTGCAATCCGAACATCATCTTGCAAAGGCAGAGGAGGTGCAGTAGATTGTAGTCTTGGAATTCAGCTTGCATTTTCTGGTACAGACAGGCATCTCAGAGTGCTTAATTCATGGTTTGAAGTGGAAAACCTGCGGCAGTACTCTCTCTATGGCTTGTACTCAAATCTAAGGGACTCTCTCACCAGCCAGTATAACAAATTCTTTTAACAGCAAAAAGATCTTCCTCTTGTGGATTATTTTGTTTGTTTAGGATGGTATGGTAACTTTTGTGACTATTCCTCTTTGCCTTCTCAATTAATTGTTGCTGGAAATTTTATTGCTTGCCAATTTTTGGTTTATAACTTTACGTGAAGAGTGTGTACATTTTAGTAGGCTGCAAGTGCCTTTACTTGTTTCTTTTATTGGCTTCATAATACAGTTTACCTCCAAATCTGAAATTGTGTATTTTGAATGTGTACATTTTATTTTTTGTATATCTGTAAGATTATTCT

>Glyma12g10140.4   sequence type=transcript   gene model=Glyma12g10140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGAAAAAGTTAGAAGTAGAAATATTTTTTAGAAGTAGCTATCTTATGACTTTGTCGTTGGACATGTGGAACTAACCATTGAACCTAAATTTATGTGCTCATTATGGCAAGAAATTAAGCAGCATAAGTGCTTAGTAATGAAGGTACGTATATTGAGGTTGTTGAATGTCATAAATTCAGTTTTAAGTGTTTTAAATGAGATTATTTGTCCCTATAGTACATGGAGTAAAAATTGTTATGTACTCTGAGATTGCTGCACCAACCTACTAAAAGCATAATATATGGCACAACATAACCATGTTGAGAGATCAAATATTACTATAATACCTACCATACAATACACACCCTGTCCTGCAACCTCCATTAAAGAAGTTAGGTATACAATGGCCAACCCTGACCTATATTCTTTATATCTAGTTCAATGCCGAGGTTATGGTTCTAAACTGTCACTTTCATTTGTTTTTCCAATATTCCACTAGTTTTGACATCCCGCTCAATGAAGCAAAGTTTCTACTTTTGCAGCTATCTTAAGTTTCATCATGCATGCCAAGGTACGTGAGTTAGAGATAGAGAAATTTCAGTTACCCTGAAGGATAACTACGGTGGATATATGGTGGCATTTGCGGGAAAGAAATATGCTGCACGTTCTCCACTTGCGTTTGTCGCAAACAGCACATACACCGTGACAAGTTTTACACTGGTGCTAGAGTTTCAGAGGGGTAGGCTGCATAACTTGTACTGGAAGAGAGACGGCTGTTCTTCATGCAAGGGGAAATCGAACTTGGTATGCCTCAACAAACAAGATTGTGCAATCCGAACATCATCTTGCAAAGGCAGAGGAGGTGCAGTAGATTGTAGTCTTGGAATTCAGCTTGCATTTTCTGGTACAGACAGGCATCTCAGAGTGCTTAATTCATGGTTTGAAGTGGAAAACCTGCGGCAGTACTCTCTCTATGGCTTGTACTCAAATCTAAGGGACTCTCTCACCAGCCAGTATAACAAATTCTTTTAACAGCAAAAAGATCTTCCTCTTGTGGATTATTTTGTTTGTTTAGGATGGTATGGTAACTTTTGTGACTATTCCTCTTTGCCTTCTCAATTAATTGTTGCTGGAAATTTTATTGCTTGCCAATTTTTGGTTTATAACTTTACGTGAAGAGTGTGTACATTTTAGTAGGCTGCAAGTGCCTTTACTTGTTTCTTTTATTGGCTTCATAATACAGTTTACCTCCAAATCTGAAATTGTGTATTTTGAATGTGTACATTTTATTTTTTGTATATCTGTAAGATTATTCT

Coding sequences of Glyma12g10140

Limit To All Plant Sequences

>Glyma12g10140.1   sequence type=CDS   gene model=Glyma12g10140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCACTCAAAAGGGCATCGTGGTTGCTGCTGCTGCCACTGTTATCTGCAGTTGCTGCTGCTGCCACCAACACCAACAGTGTGTACCATCCTTGTTCTGATGCCAGGATTCAGAGATCTGATGGCTTCACTTTTGGCATTGCCTTCAGTTCCAGGGACTCTTTCTTCTACAACCAGAACCAGTCCCTCCAGCTCTCTCCCTGTGACCGACGCCTCTCTCTCTCTTCCTCCAACGCTCAGCTTGCTCTCTTCCGTCCCAGAGTTGATGAGATCTCTCTCCTCACCATCAACACCTCTAGTTTCTTCCCTGATAACTACGGTGGATATATGGTGGCATTTGCGGGAAAGAAATATGCTGCACGTTCTCCACTTGCGTTTGTCGCAAACAGCACATACACCGTGACAAGTTTTACACTGGTGCTAGAGTTTCAGAGGGGTAGGCTGCATAACTTGTACTGGAAGAGAGACGGCTGTTCTTCATGCAAGGGGAAATCGAACTTGGTATGCCTCAACAAACAAGATTGTGCAATCCGAACATCATCTTGCAAAGGCAGAGGAGGTGCAGTAGATTGTAGTCTTGGAATTCAGCTTGCATTTTCTGGTACAGACAGGCATCTCAGAGTGCTTAATTCATGGTTTGAAGTGGAAAACCTGCGGCAGTACTCTCTCTATGGCTTGTACTCAAATCTAAGGGACTCTCTCACCAGCCAGTATAACAAATTCTTTTAA

>Glyma12g10140.2   sequence type=CDS   gene model=Glyma12g10140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCACTCAAAAGGGCATCGTGGTTGCTGCTGCTGCCACTGTTATCTGCAGTTGCTGCTGCTGCCACCAACACCAACAGTGTGTACCATCCTTGTTCTGATGCCAGGATTCAGAGATCTGATGGCTTCACTTTTGGCATTGCCTTCAGTTCCAGGGACTCTTTCTTCTACAACCAGAACCAGTCCCTCCAGCTCTCTCCCTGTGACCGACGCCTCTCTCTCTCTTCCTCCAACGCTCAGCTTGCTCTCTTCCGTCCCAGAGTTGATGAGATCTCTCTCCTCACCATCAACACCTCTAGTTTCTTCCCTGATAACTACGGTGGATATATGGTGGCATTTGCGGGAAAGAAATATGCTGCACGTTCTCCACTTGCGTTTGTCGCAAACAGCACATACACCGTGACAAGTTTTACACTGGTGCTAGAGTTTCAGAGGGGTAGGCTGCAGAACTTTTACCGGAAGACAGACGGTTGTTCTTCAATTATTTCACTATATATCTTACTAATTGTTAAATACTAA

>Glyma12g10140.3   sequence type=CDS   gene model=Glyma12g10140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCACTCAAAAGGGCATCGTGGTTGCTGCTGCTGCCACTGTTATCTGCAGTTGCTGCTGCTGCCACCAACACCAACAGTGTGTACCATCCTTGTTCTGATGCCAGGATTCAGAGATCTGATGGCTTCACTTTTGGCATTGCCTTCAGTTCCAGGGACTCTTTCTTCTACAACCAGAACCAGTCCCTCCAGCTCTCTCCCTGTGACCGACGCCTCTCTCTCTCTTCCTCCAACGCTCAGCTTGCTCTCTTCCGTCCCAGAGTTGATGAGATCTCTCTCCTCACCATCAACACCTCTAGTTTCTTCCCTGATAACTACGGTGGATATATGGTGGCATTTGCGGGAAAGAAATATGCTGCACGTTCTCCACTTGCGTTTGTCGCAAACAGCACATACACCGTGACAAGTTTTACACTGGTAAGAGTTGTGAATCATGGACCTGATGAGTTGAGTTTTTGGTCTGTTATTGAAAGGCTTGGTTGGAGTTTCCATTTGATTAGGTGCTAG

>Glyma12g10140.4   sequence type=CDS   gene model=Glyma12g10140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGGCATTTGCGGGAAAGAAATATGCTGCACGTTCTCCACTTGCGTTTGTCGCAAACAGCACATACACCGTGACAAGTTTTACACTGGTGCTAGAGTTTCAGAGGGGTAGGCTGCATAACTTGTACTGGAAGAGAGACGGCTGTTCTTCATGCAAGGGGAAATCGAACTTGGTATGCCTCAACAAACAAGATTGTGCAATCCGAACATCATCTTGCAAAGGCAGAGGAGGTGCAGTAGATTGTAGTCTTGGAATTCAGCTTGCATTTTCTGGTACAGACAGGCATCTCAGAGTGCTTAATTCATGGTTTGAAGTGGAAAACCTGCGGCAGTACTCTCTCTATGGCTTGTACTCAAATCTAAGGGACTCTCTCACCAGCCAGTATAACAAATTCTTTTAA

Predicted protein sequences of Glyma12g10140

Limit To All Plant Sequences

>Glyma12g10140.1   sequence type=predicted peptide   gene model=Glyma12g10140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALKRASWLLLLPLLSAVAAAATNTNSVYHPCSDARIQRSDGFTFGIAFSSRDSFFYNQNQSLQLSPCDRRLSLSSSNAQLALFRPRVDEISLLTINTSSFFPDNYGGYMVAFAGKKYAARSPLAFVANSTYTVTSFTLVLEFQRGRLHNLYWKRDGCSSCKGKSNLVCLNKQDCAIRTSSCKGRGGAVDCSLGIQLAFSGTDRHLRVLNSWFEVENLRQYSLYGLYSNLRDSLTSQYNKFF*

>Glyma12g10140.2   sequence type=predicted peptide   gene model=Glyma12g10140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALKRASWLLLLPLLSAVAAAATNTNSVYHPCSDARIQRSDGFTFGIAFSSRDSFFYNQNQSLQLSPCDRRLSLSSSNAQLALFRPRVDEISLLTINTSSFFPDNYGGYMVAFAGKKYAARSPLAFVANSTYTVTSFTLVLEFQRGRLQNFYRKTDGCSSIISLYILLIVKY*

>Glyma12g10140.3   sequence type=predicted peptide   gene model=Glyma12g10140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALKRASWLLLLPLLSAVAAAATNTNSVYHPCSDARIQRSDGFTFGIAFSSRDSFFYNQNQSLQLSPCDRRLSLSSSNAQLALFRPRVDEISLLTINTSSFFPDNYGGYMVAFAGKKYAARSPLAFVANSTYTVTSFTLVRVVNHGPDELSFWSVIERLGWSFHLIRC*

>Glyma12g10140.4   sequence type=predicted peptide   gene model=Glyma12g10140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVAFAGKKYAARSPLAFVANSTYTVTSFTLVLEFQRGRLHNLYWKRDGCSSCKGKSNLVCLNKQDCAIRTSSCKGRGGAVDCSLGIQLAFSGTDRHLRVLNSWFEVENLRQYSLYGLYSNLRDSLTSQYNKFF*

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