SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G27230 | AT | Annotation by Michelle Graham. TAIR10: transcription factor-related | chr2:11650895-11653840 FORWARD LENGTH=650 | SoyBase | E_val: 2.00E-114 | ISS |
| GO:0006342 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chromatin silencing | SoyBase | N/A | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0009855 | GO-bp | Annotation by Michelle Graham. GO Biological Process: determination of bilateral symmetry | SoyBase | N/A | ISS |
| GO:0009887 | GO-bp | Annotation by Michelle Graham. GO Biological Process: organ morphogenesis | SoyBase | N/A | ISS |
| GO:0009965 | GO-bp | Annotation by Michelle Graham. GO Biological Process: leaf morphogenesis | SoyBase | N/A | ISS |
| GO:0010014 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meristem initiation | SoyBase | N/A | ISS |
| GO:0010051 | GO-bp | Annotation by Michelle Graham. GO Biological Process: xylem and phloem pattern formation | SoyBase | N/A | ISS |
| GO:0010073 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meristem maintenance | SoyBase | N/A | ISS |
| GO:0010078 | GO-bp | Annotation by Michelle Graham. GO Biological Process: maintenance of root meristem identity | SoyBase | N/A | ISS |
| GO:0010479 | GO-bp | Annotation by Michelle Graham. GO Biological Process: stele development | SoyBase | N/A | ISS |
| GO:0016569 | GO-bp | Annotation by Michelle Graham. GO Biological Process: covalent chromatin modification | SoyBase | N/A | ISS |
| GO:0031047 | GO-bp | Annotation by Michelle Graham. GO Biological Process: gene silencing by RNA | SoyBase | N/A | ISS |
| GO:0045893 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0048364 | GO-bp | Annotation by Michelle Graham. GO Biological Process: root development | SoyBase | N/A | ISS |
| GO:0048439 | GO-bp | Annotation by Michelle Graham. GO Biological Process: flower morphogenesis | SoyBase | N/A | ISS |
| GO:0048519 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of biological process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| GO:0042803 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein homodimerization activity | SoyBase | N/A | ISS |
| PTHR13902 | Panther | SERINE/THREONINE-PROTEIN KINASE WNK (WITH NO LYSINE)-RELATED | JGI | ISS | |
| PTHR13902:SF5 | Panther | MAPKKK | JGI | ISS | |
| UniRef100_B9RIZ8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein, putative n=1 Tax=Ricinus communis RepID=B9RIZ8_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233CCEE | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233CCEE related cluster n=1 Tax=unknown RepID=UPI000233CCEE | SoyBase | E_val: 0 | ISS |
|
Glyma12g09990 not represented in the dataset |
Glyma12g09990 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma11g18290 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.12g094500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma12g09990.2 sequence type=CDS gene model=Glyma12g09990 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGGTTTTCGCTCAAAGAGGCTTTGAGGACTCTGTGCTCAAGGAATCGCTGGTCTTATGCCGTGTTCTGGAAGATCGGTTGTAATAATTCCAAGTTGTTAATCTGGGAAGATTACTACTACGAACCCTTGCCCTCTCCTTTCCCTCCACGAACTGTTGGGAGGTCTAATTTTCCTTACCAAGATGGGGAAGGATGTTGGTTTTCTTCTGAGTCTCAGCTAGGGATTCAGGAGGAGGACAGAGTCCGTGTATTGATCAACAAAATGATGGTGAATAATTCAGTCAGTATTGCTGGAGAAGGGATAGTTGGACGGGCAGCATTTACAGGAAACTATCAGTGGATTCTTTTGAACAATTTCACTAGAGATGCTTATCCACCAGAGGTATATCCTGAGTTGCATTACCAATTTTCAGCTGGAATGCAGACGGTGGCAGTTATTCCTGTGCTTCCCCATGGGGTTGTTCAACTAGGTTCTTTCTCGCCGATAATGGAAGATATAGGATTTGTGAATGATGTAAAGAACTTTATCTTGCAATTGGGATGTGTACCTGGTGCCCTTCTATCTGAAGACTATTCAGCAAAAGTTTCTAATGAAAAATTCGCTGGACCTGTGACCGTTGATCCACCTGTCATTACTTCAAACTGCACTCCCTCGGTAGCTAATGGTTCCAACCAACTTACTAATTCTCCTCTTGCTTCAAGGCCTGTTGCTCAGCCACCTCATCCTCTAAGGGGAGGAATAAATAATTACCAGGGTTCTTTATTGACACCTCAAGCCTATAACCCGAACCAGGTATTTGATGGCATTTGCCAACCAAAGGCTCATTCAATGATCAAAACAAATGTCTGTGGCCAACCAAAGAAGACCATTGTTGAGGCTGAAGCTAAGGTGATACCTACAAATTTTGATTCATGTCTGCAACAACATTCTGTTTATAATGCTAGATCTGCATTCAATGAGTTATCTAGTTTCAATCAATCAAATCTGAGTGACGGCAGCCTTAAATATATGGAACAACAAACATCAGGTGTTGGGAGACAGAGTCAAGTTATTCCTAACGTGAATCCATCAAGTGCCTTAAATATGCCTCGGCTGAAAATCGATGGAGGTAAAATTCTTGAACAGAATCAGAGTTCTAGTGACAGTTCACTACTCGGAGGAATCCCAATATGTAGTGGGAGTAATCTTTTGAGGACAAATATGATTAACTGCTCACTTTCAAATCCTCCCAAAGTATCCACTAACACTTCTGATTTTTCTGGAATGTACAAGGTTGGGTTTGGACTCCAAAGTAACAATACAACAACTAATGCTGTGCTTTGTTCTGTGCCTAATTTCACTAATCAATCAGTTAGCAATCACATGAATCTAGAAGGCTCTGGTCAGAAAAGTCTTTCCATTGATTTAAAGCAAGTGTGGGATGCCTTTGCGTCAACTGATCAAAGGATAGATGATGATTTGCTTCAGGCCGCCCTTAAGATTCCATCTCTTCATCTGGAGGAGCATGTGCCTATGGGTGATCACATCTCTGGTTTTGTTCAAGATTGCCTCAGTAAAGATCTTACTAGTCAACATATGATGAAAATGAATGTTAAGCATGCAGAAGCCGATGCTCAACTTCCATCAGGTGATGACCTCTTCGATGTTTTGGGCGTGGATTTGAAAAGGAGACTACTCAATGGAAACCGGAATGAGTTGCTTGCCACTGATTCAGATGCCATCACAGAACATCTAGATAAAAAGGCAACACACATGAATTTGCAAGGTGTAGGTCCTAATAATAGTTATTCAGTTAATGAAGCTATATCAGAAAGTGGCATCTTCTCTGGAACGGACACAGACCACCTTTTAGATGCTGTGGTTTTAAAAGCTCAATCTGCTGCAAAACAGAATTCTGATGAAATGTCATGCAGGACAACATTGACAAGGATTAGTACCGCCTCAATTCCTTCTCCTGTCTGCAAGCAAGTTATGCCTGATCATGTTGCCCCGAGGGGATTGTTTGATTTTCCTAAGACCGGAGTTAAAACAGCTTCTGCAGAAACAAGTTCTCTTAGGTCTGGGTGTAGCAAGGATGATGCTGGAAACTGCTCTCAAACTACTTCCATATATGGGTCTAAGCTTAGTTCATGGGTTGAGAATAGTAGTAATTTTAAACGTGAAAGCAGTGTTTCAACTGGATACTCCAAGCGACCAGATGAAGTTTGCAAATCAAATCGTAAAAGACTTAAACCAGGAGAGAACCCTAGGCCTAGGCCTAAAGATCGCCAAATGATTCAAGATCGTGTGAAAGAGTTGCGGGAAATTGTGCCAAATGGAGCAAAATGTAGCATAGATGCACTTCTGGAAAAGACCATCAAGCATATGCTTTTCCTGCAAAGTGTAACAAAGCATGCTGACAAGCTGAAACAGACAGGGGAATCTAAGATTGTCAGTAAAGAAGGTGGATTGCTATTAAAAGATAACTTTGAGGGAGGGGCTACATGGGCATATGAGGTTGGTGCACAATCAATGGTTTGTCCAATCATTGTTGAGGATCTCAATCCTCCTCGTCAGATGCTAGTAGAGATGCTTTGTGAGGAATGCGGTTTCTTTCTGGAAATAGCTGACTTAATCAGAGGATTAGGTTTAACCATCTTGAAGGGAGTCATGGAAGCTCGCAATGACAAGATCTGGGCACGCTTTGCTGTTGAGGCAAACAGGGATGTAACCAGGATGGAAATATTTATGTCACTGGTTCGTCTTTTGGATCAAACGATGAAGGGTGGTGCATCTTCGTCGAATGCAATTGATAACAACATGATGCTGTATCATTCTTTCCCACAAGCTACCCAGATACCAGCAACTGGCAGGCCTAGTAGTTTGCAATGA
>Glyma12g09990.2 sequence type=predicted peptide gene model=Glyma12g09990 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGFSLKEALRTLCSRNRWSYAVFWKIGCNNSKLLIWEDYYYEPLPSPFPPRTVGRSNFPYQDGEGCWFSSESQLGIQEEDRVRVLINKMMVNNSVSIAGEGIVGRAAFTGNYQWILLNNFTRDAYPPEVYPELHYQFSAGMQTVAVIPVLPHGVVQLGSFSPIMEDIGFVNDVKNFILQLGCVPGALLSEDYSAKVSNEKFAGPVTVDPPVITSNCTPSVANGSNQLTNSPLASRPVAQPPHPLRGGINNYQGSLLTPQAYNPNQVFDGICQPKAHSMIKTNVCGQPKKTIVEAEAKVIPTNFDSCLQQHSVYNARSAFNELSSFNQSNLSDGSLKYMEQQTSGVGRQSQVIPNVNPSSALNMPRLKIDGGKILEQNQSSSDSSLLGGIPICSGSNLLRTNMINCSLSNPPKVSTNTSDFSGMYKVGFGLQSNNTTTNAVLCSVPNFTNQSVSNHMNLEGSGQKSLSIDLKQVWDAFASTDQRIDDDLLQAALKIPSLHLEEHVPMGDHISGFVQDCLSKDLTSQHMMKMNVKHAEADAQLPSGDDLFDVLGVDLKRRLLNGNRNELLATDSDAITEHLDKKATHMNLQGVGPNNSYSVNEAISESGIFSGTDTDHLLDAVVLKAQSAAKQNSDEMSCRTTLTRISTASIPSPVCKQVMPDHVAPRGLFDFPKTGVKTASAETSSLRSGCSKDDAGNCSQTTSIYGSKLSSWVENSSNFKRESSVSTGYSKRPDEVCKSNRKRLKPGENPRPRPKDRQMIQDRVKELREIVPNGAKCSIDALLEKTIKHMLFLQSVTKHADKLKQTGESKIVSKEGGLLLKDNFEGGATWAYEVGAQSMVCPIIVEDLNPPRQMLVEMLCEECGFFLEIADLIRGLGLTILKGVMEARNDKIWARFAVEANRDVTRMEIFMSLVRLLDQTMKGGASSSNAIDNNMMLYHSFPQATQIPATGRPSSLQ*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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