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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G44190 | AT | Annotation by Michelle Graham. TAIR10: FAD/NAD(P)-binding oxidoreductase family protein | chr3:15902004-15903402 REVERSE LENGTH=367 | SoyBase | E_val: 0 | ISS |
| GO:0009407 | GO-bp | Annotation by Michelle Graham. GO Biological Process: toxin catabolic process | SoyBase | N/A | ISS |
| GO:0010200 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to chitin | SoyBase | N/A | ISS |
| GO:0010583 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cyclopentenone | SoyBase | N/A | ISS |
| GO:0042744 | GO-bp | Annotation by Michelle Graham. GO Biological Process: hydrogen peroxide catabolic process | SoyBase | N/A | ISS |
| GO:0046482 | GO-bp | Annotation by Michelle Graham. GO Biological Process: para-aminobenzoic acid metabolic process | SoyBase | N/A | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
| GO:0009055 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: electron carrier activity | SoyBase | N/A | ISS |
| GO:0016491 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity | SoyBase | N/A | ISS |
| GO:0050660 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: flavin adenine dinucleotide binding | SoyBase | N/A | ISS |
| KOG2495 | KOG | NADH-dehydrogenase (ubiquinone) | JGI | ISS | |
| PTHR22915 | Panther | NADH DEHYDROGENASE-RELATED | JGI | ISS | |
| PTHR22915:SF5 | Panther | APOPTOSIS-INDUCING FACTOR (AIF)-LIKE MITCHONDRION-ASSOCIATED INDUCER OF DEATH (P53-RESPONSIVE GENE 3) (AMID PROTEIN) | JGI | ISS | |
| PF00070 | PFAM | Pyridine nucleotide-disulphide oxidoreductase | JGI | ISS | |
| PF07992 | PFAM | Pyridine nucleotide-disulphide oxidoreductase | JGI | ISS | |
| UniRef100_B9SD10 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Apoptosis-inducing factor, putative n=1 Tax=Ricinus communis RepID=B9SD10_RICCO | SoyBase | E_val: 1.00E-180 | ISS |
| UniRef100_I1LRK7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LRK7_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma12g09930 not represented in the dataset |
Glyma12g09930 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma11g18330 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.12g094000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma12g09930.2 sequence type=transcript gene model=Glyma12g09930 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CGAAACTTCGAATAAAAGTTTATAAAGAAACAATTTTTTTCTCTCATTTTATCTTCTTTTTTATTCAAACAGAAAAGGAAGAGCATCACTAGCGTTGTCCTGCCAGCCAATCCAACGATGCGTATACCCAACTATGAAGGAATATTTTGAGATTACATGGGCGAGTTTGAGGTCAATGGTTGAGCCATCTTTTGCAGAGAGGTCAGTGATCAATCACAGAGATTACTTTACCAATGGCGACATCGTTACGTCCAATGCCGTCAATGTTACAGAAACAGAAGTGTTGACTGCAGATGGCCATCGAATTGGCTATGACTATCTTGTTATTGCCACTGGCCATGCAGATCCTCTCCCCAAAAGTAGGAGGGAAAGACTTAATCAGTTCAAAGAAGACAATCAAAAGATAAAATCTGCTCAATCCATTCTGATTATTGGAGGAGGTCCCACTGGTGTGGAACTTGCTGGAGAGATAGCTGTTGATTTTCCAGATAAGAAACTTACACTAGTGCACAAAGGAGCGAGGCTGCTGGAATTCATAGGGGCAAAAGCTGGGGATAAGACTCTAAATTGGTTGAAATCAAAGAATGTTGTGGTGAAACTAGAGCAATCAGTTGACTTGAATGCATTCAAAGATGGACAGAAGATATATCAAACTTCCAACGGAGAGACCATTGAAGCAGATTGTCATTTCTTATGTATAGGGAAACCACTTGCTTCAGCATGGCTTAAGGAAACTGTGTTGAAGAATGACTTGGATGGTCAAGGAAGGATCAAGGTAGATGAAAAATTAAGAGTCAAGGGCAAGGACAACATTTTTGCAATTGGAGATATTACAGATATTCCAGAAATCAAGCAAGGTTTTTTGGCACAGCAGCAGGCTGAAGTGGTTGTGAAGAACTTGAAGGTGATATTAGAGGGAGGAAGAGAATGTAGGATGGAAACTTACAAGCCACATTCAGCAATAGCAATAGTTTCACTTGGGAGGAAAGATGCTGTGGCACAGTTACCATTCTTGACAATCGGTGGAAGAATTCCTGGATTCATCAAGTCTGGAGATTTGTTTGTTGGTAAAACAAGAAAACAAATGGGACTCAATCCAGATATTGTACAAGCTTGACTAGATATCGTGCATGGTGTGTATATAAATTACAAAACCGATCTGTTTCATTGTTTGTGTGGTTTATTGCAGTATTTTCAATTGATTCCTATAAAGAACACATATGTACTATATGTAAAATATCCTTATGCTTAAGTGGTGTTTCTAGAAATCATGAAATGGAATTGTGAGTTAGAAGCAGGATGCTGATTTTACCATGGAACCATTGTATCATTGACATATATATATGGTTTTGATAAAATTGATTGGATGCTTTGTTGGTTTGTCTGCAGAATGTTTGATATACTATATGAAAATTTCTTTTCTGCACCATTTCTTTTCTGAATTTTT
>Glyma12g09930.1 sequence type=CDS gene model=Glyma12g09930 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAAATAGACGGGAATAGAGTGGTAATCCTAGGAGGTGGCGTTGCGGGATCCGTCGTCGCTAAATCTCTTCAATTCCATGCCCATGTCACACTCGTTGATCCGAAGGAATATTTTGAGATTACATGGGCGAGTTTGAGGTCAATGGTTGAGCCATCTTTTGCAGAGAGGTCAGTGATCAATCACAGAGATTACTTTACCAATGGCGACATCGTTACGTCCAATGCCGTCAATGTTACAGAAACAGAAGTGTTGACTGCAGATGGCCATCGAATTGGCTATGACTATCTTGTTATTGCCACTGGCCATGCAGATCCTCTCCCCAAAAGTAGGAGGGAAAGACTTAATCAGTTCAAAGAAGACAATCAAAAGATAAAATCTGCTCAATCCATTCTGATTATTGGAGGAGGTCCCACTGGTGTGGAACTTGCTGGAGAGATAGCTGTTGATTTTCCAGATAAGAAACTTACACTAGTGCACAAAGGAGCGAGGCTGCTGGAATTCATAGGGGCAAAAGCTGGGGATAAGACTCTAAATTGGTTGAAATCAAAGAATGTTGTGGTGAAACTAGAGCAATCAGTTGACTTGAATGCATTCAAAGATGGACAGAAGATATATCAAACTTCCAACGGAGAGACCATTGAAGCAGATTGTCATTTCTTATGTATAGGGAAACCACTTGCTTCAGCATGGCTTAAGGAAACTGTGTTGAAGAATGACTTGGATGGTCAAGGAAGGATCAAGGTAGATGAAAAATTAAGAGTCAAGGGCAAGGACAACATTTTTGCAATTGGAGATATTACAGATATTCCAGAAATCAAGCAAGGTTTTTTGGCACAGCAGCAGGCTGAAGTGGTTGTGAAGAACTTGAAGGTGATATTAGAGGGAGGAAGAGAATGTAGGATGGAAACTTACAAGCCACATTCAGCAATAGCAATAGTTTCACTTGGGAGGAAAGATGCTGTGGCACAGTTACCATTCTTGACAATCGGTGGAAGAATTCCTGGATTCATCAAGTCTGGAGATTTGTTTGTTGGTAAAACAAGAAAACAAATGGGACTCAATCCAGATATTGTACAAGCTTGA >Glyma12g09930.2 sequence type=CDS gene model=Glyma12g09930 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGGAATATTTTGAGATTACATGGGCGAGTTTGAGGTCAATGGTTGAGCCATCTTTTGCAGAGAGGTCAGTGATCAATCACAGAGATTACTTTACCAATGGCGACATCGTTACGTCCAATGCCGTCAATGTTACAGAAACAGAAGTGTTGACTGCAGATGGCCATCGAATTGGCTATGACTATCTTGTTATTGCCACTGGCCATGCAGATCCTCTCCCCAAAAGTAGGAGGGAAAGACTTAATCAGTTCAAAGAAGACAATCAAAAGATAAAATCTGCTCAATCCATTCTGATTATTGGAGGAGGTCCCACTGGTGTGGAACTTGCTGGAGAGATAGCTGTTGATTTTCCAGATAAGAAACTTACACTAGTGCACAAAGGAGCGAGGCTGCTGGAATTCATAGGGGCAAAAGCTGGGGATAAGACTCTAAATTGGTTGAAATCAAAGAATGTTGTGGTGAAACTAGAGCAATCAGTTGACTTGAATGCATTCAAAGATGGACAGAAGATATATCAAACTTCCAACGGAGAGACCATTGAAGCAGATTGTCATTTCTTATGTATAGGGAAACCACTTGCTTCAGCATGGCTTAAGGAAACTGTGTTGAAGAATGACTTGGATGGTCAAGGAAGGATCAAGGTAGATGAAAAATTAAGAGTCAAGGGCAAGGACAACATTTTTGCAATTGGAGATATTACAGATATTCCAGAAATCAAGCAAGGTTTTTTGGCACAGCAGCAGGCTGAAGTGGTTGTGAAGAACTTGAAGGTGATATTAGAGGGAGGAAGAGAATGTAGGATGGAAACTTACAAGCCACATTCAGCAATAGCAATAGTTTCACTTGGGAGGAAAGATGCTGTGGCACAGTTACCATTCTTGACAATCGGTGGAAGAATTCCTGGATTCATCAAGTCTGGAGATTTGTTTGTTGGTAAAACAAGAAAACAAATGGGACTCAATCCAGATATTGTACAAGCTTGA
>Glyma12g09930.1 sequence type=predicted peptide gene model=Glyma12g09930 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEIDGNRVVILGGGVAGSVVAKSLQFHAHVTLVDPKEYFEITWASLRSMVEPSFAERSVINHRDYFTNGDIVTSNAVNVTETEVLTADGHRIGYDYLVIATGHADPLPKSRRERLNQFKEDNQKIKSAQSILIIGGGPTGVELAGEIAVDFPDKKLTLVHKGARLLEFIGAKAGDKTLNWLKSKNVVVKLEQSVDLNAFKDGQKIYQTSNGETIEADCHFLCIGKPLASAWLKETVLKNDLDGQGRIKVDEKLRVKGKDNIFAIGDITDIPEIKQGFLAQQQAEVVVKNLKVILEGGRECRMETYKPHSAIAIVSLGRKDAVAQLPFLTIGGRIPGFIKSGDLFVGKTRKQMGLNPDIVQA* >Glyma12g09930.2 sequence type=predicted peptide gene model=Glyma12g09930 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKEYFEITWASLRSMVEPSFAERSVINHRDYFTNGDIVTSNAVNVTETEVLTADGHRIGYDYLVIATGHADPLPKSRRERLNQFKEDNQKIKSAQSILIIGGGPTGVELAGEIAVDFPDKKLTLVHKGARLLEFIGAKAGDKTLNWLKSKNVVVKLEQSVDLNAFKDGQKIYQTSNGETIEADCHFLCIGKPLASAWLKETVLKNDLDGQGRIKVDEKLRVKGKDNIFAIGDITDIPEIKQGFLAQQQAEVVVKNLKVILEGGRECRMETYKPHSAIAIVSLGRKDAVAQLPFLTIGGRIPGFIKSGDLFVGKTRKQMGLNPDIVQA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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