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SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G44260 | AT | Annotation by Michelle Graham. TAIR10: Polynucleotidyl transferase, ribonuclease H-like superfamily protein | chr3:15952213-15953055 REVERSE LENGTH=280 | SoyBase | E_val: 3.00E-134 | ISS |
| GO:0000289 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nuclear-transcribed mRNA poly(A) tail shortening | SoyBase | N/A | ISS |
| GO:0002213 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to insect | SoyBase | N/A | ISS |
| GO:0009451 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA modification | SoyBase | N/A | ISS |
| GO:0009611 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to wounding | SoyBase | N/A | ISS |
| GO:0009612 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to mechanical stimulus | SoyBase | N/A | ISS |
| GO:0009693 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ethylene biosynthetic process | SoyBase | N/A | ISS |
| GO:0009873 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ethylene mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0010200 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to chitin | SoyBase | N/A | ISS |
| GO:0010228 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem | SoyBase | N/A | ISS |
| GO:0042742 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to bacterium | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
| GO:0004540 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ribonuclease activity | SoyBase | N/A | ISS |
| GO:0008408 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: 3'-5' exonuclease activity | SoyBase | N/A | ISS |
| KOG0304 | KOG | mRNA deadenylase subunit | JGI | ISS | |
| PTHR10797 | Panther | CCR4-ASSOCIATED FACTOR | JGI | ISS | |
| PF04857 | PFAM | CAF1 family ribonuclease | JGI | ISS | |
| UniRef100_B9SCZ3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Ccr4-associated factor, putative n=1 Tax=Ricinus communis RepID=B9SCZ3_RICCO | SoyBase | E_val: 4.00E-145 | ISS |
| UniRef100_I1LRJ8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LRJ8_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma12g09830 not represented in the dataset |
Glyma12g09830 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma11g18460 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.12g093100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma12g09830.2 sequence type=transcript gene model=Glyma12g09830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GCCCTATTCACCCCTACACTGAACTTGACCAGTTTCCACGCAACATCTTATAATTCTTCTCCCACTCCTCATATATAAACCTCTCCCATCCTCACCTCTTTCCCACACTCATATCCAAAACCGAATCCACTTCTCTAACTAATGGGCGTGTTCAGCGAAGATCCGAATCCCAACCCGAACCCGATCGTGATCCGAGAGGTTTGGGCCTCCAATCTCGAATCCGAATTCGAACTCATCCGCGAACTCATCGATCGCTACCCTTTTATCTCAATGGACACAGAATTTCCCGGTGTTATTTTCCGACCACATGTGGACCCCACCAAACCCTTCAACCACCGCAACCGTCCCTCCGACCACTACCGCCTCCTCAAGTCCAACGTTGACGCTCTCAACCTCATCCAGGTCGGCCTCACCCTCACCGACGCCGCCGGCAACCTCCCCGACCTCGCCGGAAACCGCTCCATCTGGGAATTCAACTTCCGTGACTTCGACGTGGCGCGTGACGCCTACGCTCCCGACTCCATCGATCTTCTCCGTCGTCAGGGCATCGATTTCGCGCGTAACACCGCCGACGGCGTGGATTCCACGTGCTTCGCGGAGCTGATGATGTCTTCGGGGCTCGTGTGCAACGACGCCGTGAGTTGGGTCACGTTCCACAGCGCGTACGATTTCGGTTACTTGGTGAAGATCTTGACGCGCCGTAACCTACCGACGAGGTTGGAGGAATTCTTGAAAACCGTGAAGGTGTTCTTCGGAGATAACGTTTACGACGTGAAGCACATGATGAGGTTCTGTGACACGCTCTACGGCGGATTGGACCGCGTTGCACGGACGCTTAACGTGGACCGCGCCGTAGGGAAGTGCCACCAGGCCGGGTCAGACAGCTTGCTGACGTGGCACGCCTTCCAGAAGATTGTTGACATTTATTTTGTAAAGGAAGAGCACCGAAAACATGCCGGTGTATTGTTTGGACTATAGGCATTCTGTTAATTATAATAACATAAAAATAATAAAAATTCAATTGATTGATTATTTATTTGTTGGATTATCTTATTTTTGTTTTATTTTATGTTGATGTGATTTCTCCTTTTGGTAGGAGATTGCGCGAATCAAGGGCAAAATTACTAGTTTACATATGCATACAATAGCCGGAGATTCAATTGTGAGTTGGTGTTTGCCTGTGTAGAGTTCAAAGAATCTAAAGGGGGGAATTGAATCATAGTTTCCCATTCAGGCCATGACTTTTGATACTATTATCGATGGCTCCAGTTTTGGTTGGTCAGACTGATTAGGTGTCAGTGATTATGAGAGGGGTGCTTTAGGAGTTAAAAAGCTTTGATCAAATTCTGGCTTCTTAGTATGAAAAACATATTCAGCTAACTTTAAGAGATGCCTTACACTTGCAGTATTTAAAATGCACTATTAGTTTTGAATTCTGTATCAGCACTTTTAGTTATATACTAGTAGGTGTTATTAATTGATGCAAGTGCAATGTTAGTCTCATGAAATAAGGAATTGTGTTTGAAATTGTATTGGAATTTGGAAGCAGTCTTCAATACTAACAGAAAGGTGACTTATGACTATTGTTGCATATTGCATAATTAGTTTTGAAGTTGCTGCTTACCTGCAGCAAACATTTAGAAGAAGTGAATAAACGTCTAATCTGCATTTGACTGATCTGAAGACTTTTATTTTATCTCAATTGTCTGCTTAGGATAAAATGCAGGCTGAAACTCCAGCTTTGCAGAAATGCATAGTATGTTTGATTGGCATATTGGGATTTTTTTGTTTGTTTGACTTACAACTTGTCTTTATGGTTATATTTGTCTTTTACTCAGGTTTTGGTATCGTAGGCTTGAAAGCTAGTTGTGTTTTTTTATATCAGTTATTACATGTTAGATAAAATTACAAAATGAAGGATCTATGATTGATATACCGTTATTCCTTGTATGTGTGGAGAGGATAAAATAATCTGTAGCATTTTAATGACAA
>Glyma12g09830.1 sequence type=CDS gene model=Glyma12g09830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGCGTGTTCAGCGAAGATCCGAATCCCAACCCGAACCCGATCGTGATCCGAGAGGTTTGGGCCTCCAATCTCGAATCCGAATTCGAACTCATCCGCGAACTCATCGATCGCTACCCTTTTATCTCAATGGACACAGAATTTCCCGGTGTTATTTTCCGACCACATGTGGACCCCACCAAACCCTTCAACCACCGCAACCGTCCCTCCGACCACTACCGCCTCCTCAAGTCCAACGTTGACGCTCTCAACCTCATCCAGGTCGGCCTCACCCTCACCGACGCCGCCGGCAACCTCCCCGACCTCGCCGGAAACCGCTCCATCTGGGAATTCAACTTCCGTGACTTCGACGTGGCGCGTGACGCCTACGCTCCCGACTCCATCGATCTTCTCCGTCGTCAGGGCATCGATTTCGCGCGTAACACCGCCGACGGCGTGGATTCCACGTGCTTCGCGGAGCTGATGATGTCTTCGGGGCTCGTGTGCAACGACGCCGTGAGTTGGGTCACGTTCCACAGCGCGTACGATTTCGGTTACTTGGTGAAGATCTTGACGCGCCGTAACCTACCGACGAGGTTGGAGGAATTCTTGAAAACCGTGAAGGTGTTCTTCGGAGATAACGTTTACGACGTGAAGCACATGATGAGGTTCTGTGACACGCTCTACGGCGGATTGGACCGCGTTGCACGGACGCTTAACGTGGACCGCGCCGTAGGGAAGTGCCACCAGGCCGGGTCAGACAGCTTGCTGACGTGGCACGCCTTCCAGAAGATTGTTGACATTTATTTTGTAAAGGAAGAGCACCGAAAACATGCCGGTGTATTGTTTGGACTATAG >Glyma12g09830.2 sequence type=CDS gene model=Glyma12g09830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGCGTGTTCAGCGAAGATCCGAATCCCAACCCGAACCCGATCGTGATCCGAGAGGTTTGGGCCTCCAATCTCGAATCCGAATTCGAACTCATCCGCGAACTCATCGATCGCTACCCTTTTATCTCAATGGACACAGAATTTCCCGGTGTTATTTTCCGACCACATGTGGACCCCACCAAACCCTTCAACCACCGCAACCGTCCCTCCGACCACTACCGCCTCCTCAAGTCCAACGTTGACGCTCTCAACCTCATCCAGGTCGGCCTCACCCTCACCGACGCCGCCGGCAACCTCCCCGACCTCGCCGGAAACCGCTCCATCTGGGAATTCAACTTCCGTGACTTCGACGTGGCGCGTGACGCCTACGCTCCCGACTCCATCGATCTTCTCCGTCGTCAGGGCATCGATTTCGCGCGTAACACCGCCGACGGCGTGGATTCCACGTGCTTCGCGGAGCTGATGATGTCTTCGGGGCTCGTGTGCAACGACGCCGTGAGTTGGGTCACGTTCCACAGCGCGTACGATTTCGGTTACTTGGTGAAGATCTTGACGCGCCGTAACCTACCGACGAGGTTGGAGGAATTCTTGAAAACCGTGAAGGTGTTCTTCGGAGATAACGTTTACGACGTGAAGCACATGATGAGGTTCTGTGACACGCTCTACGGCGGATTGGACCGCGTTGCACGGACGCTTAACGTGGACCGCGCCGTAGGGAAGTGCCACCAGGCCGGGTCAGACAGCTTGCTGACGTGGCACGCCTTCCAGAAGATTGTTGACATTTATTTTGTAAAGGAAGAGCACCGAAAACATGCCGGTGTATTGTTTGGACTATAG
>Glyma12g09830.1 sequence type=predicted peptide gene model=Glyma12g09830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGVFSEDPNPNPNPIVIREVWASNLESEFELIRELIDRYPFISMDTEFPGVIFRPHVDPTKPFNHRNRPSDHYRLLKSNVDALNLIQVGLTLTDAAGNLPDLAGNRSIWEFNFRDFDVARDAYAPDSIDLLRRQGIDFARNTADGVDSTCFAELMMSSGLVCNDAVSWVTFHSAYDFGYLVKILTRRNLPTRLEEFLKTVKVFFGDNVYDVKHMMRFCDTLYGGLDRVARTLNVDRAVGKCHQAGSDSLLTWHAFQKIVDIYFVKEEHRKHAGVLFGL* >Glyma12g09830.2 sequence type=predicted peptide gene model=Glyma12g09830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGVFSEDPNPNPNPIVIREVWASNLESEFELIRELIDRYPFISMDTEFPGVIFRPHVDPTKPFNHRNRPSDHYRLLKSNVDALNLIQVGLTLTDAAGNLPDLAGNRSIWEFNFRDFDVARDAYAPDSIDLLRRQGIDFARNTADGVDSTCFAELMMSSGLVCNDAVSWVTFHSAYDFGYLVKILTRRNLPTRLEEFLKTVKVFFGDNVYDVKHMMRFCDTLYGGLDRVARTLNVDRAVGKCHQAGSDSLLTWHAFQKIVDIYFVKEEHRKHAGVLFGL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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