Glyma12g09731 - SoyBase

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Report for Sequence Feature Glyma12g09731

Feature Type:	gene_model
Chromosome:	Gm12
Start:	7494540
stop:	7497094
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g09731

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G08380	AT	Annotation by Michelle Graham. TAIR10: photosystem I subunit O \| chr1:2641004-2641739 REVERSE LENGTH=140	SoyBase	E_val: 8.00E-65	ISS
GO:0006098	GO-bp	Annotation by Michelle Graham. GO Biological Process: pentose-phosphate shunt	SoyBase	N/A	ISS
GO:0006364	GO-bp	Annotation by Michelle Graham. GO Biological Process: rRNA processing	SoyBase	N/A	ISS
GO:0009657	GO-bp	Annotation by Michelle Graham. GO Biological Process: plastid organization	SoyBase	N/A	ISS
GO:0009768	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosynthesis, light harvesting in photosystem I	SoyBase	N/A	ISS
GO:0010207	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosystem II assembly	SoyBase	N/A	ISS
GO:0019344	GO-bp	Annotation by Michelle Graham. GO Biological Process: cysteine biosynthetic process	SoyBase	N/A	ISS
GO:0019684	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosynthesis, light reaction	SoyBase	N/A	ISS
GO:0030003	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular cation homeostasis	SoyBase	N/A	ISS
GO:0035304	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of protein dephosphorylation	SoyBase	N/A	ISS
GO:0070838	GO-bp	Annotation by Michelle Graham. GO Biological Process: divalent metal ion transport	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009522	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: photosystem I	SoyBase	N/A	ISS
GO:0009579	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: thylakoid	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_Q8L7C3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=1 Tax=Arabidopsis thaliana RepID=Q8L7C3_ARATH	SoyBase	E_val: 4.00E-62	ISS
UniRef100_UPI000233C2B9	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233C2B9 related cluster n=1 Tax=unknown RepID=UPI000233C2B9	SoyBase	E_val: 5.00E-86	ISS

Expression Patterns of Glyma12g09731

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma12g09731 not represented in the dataset	Glyma12g09731 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g09731

Paralog	Evidence	Comments
Glyma11g18640	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g09731 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g092000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g09731

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma12g09731

Limit To All Plant Sequences

>Glyma12g09731.2   sequence type=transcript   gene model=Glyma12g09731   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AATCGTTTTAAATATAAAATTTTAGATTTAATACAAAAGTTATTTAAATTATTGCAATTCAAAATCAATTTTAAAAGCAGAATTGATTCAATGAGAACCCAAATATGAGAATATTTACCCAAATTCAATGTGATTTTGGATAACGTGAAACTATAGGGTAGGATCAAGAATTCAAGATGAGCATGCTGTGTGGCATGTTTTGCAATTTGTTTGCAGGGTTTGTGAAATCGCCAGTGAGTGCTAGGAATCCCTTGAGGAAAGCTGTGGCAATGGGAAATGGGAGGGTTACATGCTTCGAGAGGAATTGGCTGCGGGCAGATTACAGTGTCATTGGGTTTGGATTGATTGGTTGGCTAGCACCCTCAAGCGTACCGGCTATCAACGGTAAAAGTCTGACTGGCCTCTTCTTTGAGAGCATTGGAGCTGAGCTAGCTCACTTCCCCACCCCTCCTGCCCTTACTTCATCCTTTTGGTTATGGCTGGTTACGTGGCACCTTGGCTTGTTCATCTGCCTCACTTTTGGGCAAATTGGATTCAAGGGAAGGACTGAAGAGTACTTTTGAATTCCAAACTTATGGAGAAATCTGTGTAATATCGCCTTCATAATGTTGTATATTATTATTGTTGTACTTGCTCCTCATCAATGTCCCAACTTCTAGTCCTGCAAAATTTCCAAAGTAACCCTGCAGTTTCAGTAACCTATCATTATCATAATTATTGATCAAGAG

Coding sequences of Glyma12g09731

Limit To All Plant Sequences

>Glyma12g09731.1   sequence type=CDS   gene model=Glyma12g09731   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCATGCTGTGTGGCATGTTTTGCAATTTGTTTGCAGGGTTTGTGAAATCGCCAGTGAGTGCTAGGAATCCCTTGAGGAAAGCTGTGGCAATGGGAAATGGGAGGGTTACATGCTTCGAGAGGAATTGGCTGCGGGCAGATTACAGTGTCATTGGGTTTGGATTGATTGGTTGGCTAGCACCCTCAAGCGTACCGGCTATCAACGGTAAAAGTCTGACTGGCCTCTTCTTTGAGAGCATTGGAGCTGAGCTAGCTCACTTCCCCACCCCTCCTGCCCTTACTTCATCCTTTTGGTTATGGCTGGTTACGTGGCACCTTGGCTTGTTCATCTGCCTCACTTTTGGGCAAATTGGATTCAAGGGAAGGACTGAAGAGTACTTTTGA

>Glyma12g09731.2   sequence type=CDS   gene model=Glyma12g09731   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCATGCTGTGTGGCATGTTTTGCAATTTGTTTGCAGGGTTTGTGAAATCGCCAGTGAGTGCTAGGAATCCCTTGAGGAAAGCTGTGGCAATGGGAAATGGGAGGGTTACATGCTTCGAGAGGAATTGGCTGCGGGCAGATTACAGTGTCATTGGGTTTGGATTGATTGGTTGGCTAGCACCCTCAAGCGTACCGGCTATCAACGGTAAAAGTCTGACTGGCCTCTTCTTTGAGAGCATTGGAGCTGAGCTAGCTCACTTCCCCACCCCTCCTGCCCTTACTTCATCCTTTTGGTTATGGCTGGTTACGTGGCACCTTGGCTTGTTCATCTGCCTCACTTTTGGGCAAATTGGATTCAAGGGAAGGACTGAAGAGTACTTTTGA

Predicted protein sequences of Glyma12g09731

Limit To All Plant Sequences

>Glyma12g09731.1   sequence type=predicted peptide   gene model=Glyma12g09731   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSMLCGMFCNLFAGFVKSPVSARNPLRKAVAMGNGRVTCFERNWLRADYSVIGFGLIGWLAPSSVPAINGKSLTGLFFESIGAELAHFPTPPALTSSFWLWLVTWHLGLFICLTFGQIGFKGRTEEYF*

>Glyma12g09731.2   sequence type=predicted peptide   gene model=Glyma12g09731   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSMLCGMFCNLFAGFVKSPVSARNPLRKAVAMGNGRVTCFERNWLRADYSVIGFGLIGWLAPSSVPAINGKSLTGLFFESIGAELAHFPTPPALTSSFWLWLVTWHLGLFICLTFGQIGFKGRTEEYF*

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