SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G27470 | AT | Annotation by Michelle Graham. TAIR10: nuclear factor Y, subunit B11 | chr2:11745196-11746375 REVERSE LENGTH=275 | SoyBase | E_val: 6.00E-36 | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0005622 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: intracellular | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| GO:0043565 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding | SoyBase | N/A | ISS |
| KOG0870 | KOG | DNA polymerase epsilon, subunit D | JGI | ISS | |
| PTHR11064 | Panther | TATA-BINDING PROTEIN-ASSOCIATED PHOSPHOPROTEIN | JGI | ISS | |
| PTHR11064:SF10 | Panther | DNA POLYMERASE EPSILON P17 SUBUNIT (DNA POLYMERASE EPSILON SUBUNIT 3) | JGI | ISS | |
| PF00808 | PFAM | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | JGI | ISS | |
| UniRef100_I1LRH0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1LRH0_SOYBN | SoyBase | E_val: 1.00E-96 | ISS |
| UniRef100_I3TAW2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Nuclear transcription factor Y subunit B4 n=1 Tax=Medicago truncatula RepID=I3TAW2_MEDTR | SoyBase | E_val: 2.00E-55 | ISS |
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Glyma12g09520 not represented in the dataset |
Glyma12g09520 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma11g18960 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.12g089400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma12g09520.1 sequence type=CDS gene model=Glyma12g09520 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCGGAGGCGGAGGAGCTGCCCCGTTCTATCATGCGCCGCGTCGTGAAGTACAAGTTGTCCCGTTGCTCCGAAGACGGAGAAATTTCCGTCAGCAAAGACGGTCTTCTCGCATTCTCCGAAAGCGGTAGGATCTTCATCCACTACCTTTCCGCAACGGCTAATGACATATGTAAGGAGTCAAAGAGGCAGATTATCAATGTTGAGAATGTTTTCAAAGCTCTTGAGGAAACTGAGTTCCCTGAGTTTGTTTGCCCTCTAAAAGCTTCCCTTGAAGAGTTTAGGAAGAAGAATGCTAGAAAGAAAGTCGTAGTGTCAAAGGGAAAGGAAGATGAGCCGAAGAAGAAAAGGAAGTTGGAAGGTGAGTCATCTGATAAAGGCGAAGGTTCTGAGAAAGGAGAAGATAATGATAAAGGTGAGGATTCCGATAAAGGTGTGAGTGGTGATGACCAATGA
>Glyma12g09520.1 sequence type=predicted peptide gene model=Glyma12g09520 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSEAEELPRSIMRRVVKYKLSRCSEDGEISVSKDGLLAFSESGRIFIHYLSATANDICKESKRQIINVENVFKALEETEFPEFVCPLKASLEEFRKKNARKKVVVSKGKEDEPKKKRKLEGESSDKGEGSEKGEDNDKGEDSDKGVSGDDQ*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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