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Report for Sequence Feature Glyma12g09501

Feature Type:gene_model
Chromosome:Gm12
Start:7294630
stop:7297103
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma12g09501
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G27510AT Annotation by Michelle Graham. TAIR10: ferredoxin 3 | chr2:11758281-11758748 REVERSE LENGTH=155 SoyBaseE_val: 7.00E-58ISS
GO:0009688GO-bp Annotation by Michelle Graham. GO Biological Process: abscisic acid biosynthetic process SoyBaseN/AISS
GO:0022900GO-bp Annotation by Michelle Graham. GO Biological Process: electron transport chain SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009536GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plastid SoyBaseN/AISS
GO:0009055GO-mf Annotation by Michelle Graham. GO Molecular Function: electron carrier activity SoyBaseN/AISS
GO:0051536GO-mf Annotation by Michelle Graham. GO Molecular Function: iron-sulfur cluster binding SoyBaseN/AISS
GO:0051537GO-mf Annotation by Michelle Graham. GO Molecular Function: 2 iron, 2 sulfur cluster binding SoyBaseN/AISS
PF00111PFAM 2Fe-2S iron-sulfur cluster binding domain JGI ISS
UniRef100_C6SVS3UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SVS3_SOYBN SoyBaseE_val: 6.00E-105ISS
UniRef100_G7ITT5UniRef Annotation by Michelle Graham. Most informative UniRef hit: Ferredoxin n=1 Tax=Medicago truncatula RepID=G7ITT5_MEDTR SoyBaseE_val: 6.00E-80ISS

Expression Patterns of Glyma12g09501
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma12g09501 not represented in the dataset
Glyma12g09501 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g09501
ParalogEvidenceComments
Glyma11g18980 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g09501 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.12g089200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma12g09501
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma12g09501
>Glyma12g09501.1   sequence type=CDS   gene model=Glyma12g09501   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGCCAGAAGGATCTGATTCACTTTACTTTCAACAGATACGACACATTACCATTCATAATAAACCCCAAAACAAAGTTCTTCTCTCTCTCTCTCTCTCTCTCTCGTGAATCATCACTTCGTTTTCCCCGCTTTCAACACCGCTCATCTTCTCTTCTCTTTTCTCTGCTAATCATGGCAACCTTGTCTACTAATCATTGCACATTACAAACTGCAAGCAAAAATCCATCCATTGTTGCCACCATAGTGAAGTGTCCTTCTTCTTTAAGGTCTGTGAAGAGCGTTTCCAGATCTTTCGGCTTGAAGTCGGCCTCTTCATTTAGAGTCACTGCCATGGCTTCTTACAAGGTTAAGCTGATTGGCCCAGATGGAACAGAGAACGAGTTCGAAGCCACTGACGATACTTACATCTTAGATGCAGCAGAGAGTGCTGGAGTTGAACTTCCTTACTCATGCCGAGCTGGAGCATGCTCCACCTGTGCTGGGAAGATTGTTTCTGGTTCTGTGGACCAGTCCGATGGCTCATTCCTCGATGACAACCAACTGAAGGAAGGCTTTGTTCTTACCTGTGTCTCCTATCCAACTGCAGACTGTGTAATTGAAACTCACAAGGAAGGAGATCTCTACTGA
Predicted protein sequences of Glyma12g09501
>Glyma12g09501.1   sequence type=predicted peptide   gene model=Glyma12g09501   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GQKDLIHFTFNRYDTLPFIINPKTKFFSLSLSLSRESSLRFPRFQHRSSSLLFSLLIMATLSTNHCTLQTASKNPSIVATIVKCPSSLRSVKSVSRSFGLKSASSFRVTAMASYKVKLIGPDGTENEFEATDDTYILDAAESAGVELPYSCRAGACSTCAGKIVSGSVDQSDGSFLDDNQLKEGFVLTCVSYPTADCVIETHKEGDLY*






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