Glyma12g09490 - SoyBase

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Report for Sequence Feature Glyma12g09490

Feature Type:	gene_model
Chromosome:	Gm12
Start:	7285829
stop:	7289156
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g09490

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G04030	AT	Annotation by Michelle Graham. TAIR10: Homeodomain-like superfamily protein \| chr3:1042920-1044574 REVERSE LENGTH=394	SoyBase	E_val: 4.00E-129	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PF00249	PFAM	Myb-like DNA-binding domain	JGI		ISS
UniRef100_B9SHH4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor, putative n=1 Tax=Ricinus communis RepID=B9SHH4_RICCO	SoyBase	E_val: 7.00E-174	ISS
UniRef100_I1LRG6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LRG6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma12g09490

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g09490

Paralog	Evidence	Comments
Glyma11g18990	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g09490 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g089100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g09490

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma12g09490

Limit To All Plant Sequences

>Glyma12g09490.2   sequence type=transcript   gene model=Glyma12g09490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTACATATATATGCACTAATTAAACAGGAACTCAAATGGAATATTTTGCACTGCCTTAGAATAGAAAGTGGAACTAAGAAAGAGGGTCCACAAGCATAACACAAGTGAGGGAAAAAGTGGGAAGGGTCTATTTGTCAGGTCACCATGCTTAAAGGATTAAGTTCTGTTTTCCATTGGTTGTACCAAAGATTCCATGTGTTACTAGTTCCCCTCCAGCTCTCATATATAACTACCTGTCTAAGCAGGCTTTGCAATGAAGAGAAATGTGCAGTGGAGAAACAAGACAAAGCACCACAAGTTAACATAGGTTCACTTATATATTACTATCAAGTCTTATTATTAATACTTGTAAATAGAGCATTATCAGGTTTCACCTTTCATTGGTAGCAAAGTGATCATTCAGAGAATAGAAGCCTGATCAGGTTGAATGTACACTCATCAGCAACATCAAGGAAAGAACATTCACTCTTCTTCCAGAATGCCAATCCCTTCTGAGAGGCAGATGTTCCTTCAAACAGGAAATGGCTCTGGTGATTCTGGACTTGTTCTCTCAACTGATGCTAAGCCTAGATTGAAATGGACACCTGATCTTCATGCAAGGTTTATAGAAGCTGTGCAGCAATTAGGAGGAGCTGACAAGGCAACTCCAAAAACGGTAATGAAACTCATAGGGATTCCGGGTCTTACCTTATATCATCTGAAGAGCCATCTCCAGAAATACAGATTGAGCAAGAGTCTGCATGGACAAAGTAACAATATGACACACAAAATAACCATAAATTCAGGTGCAGCAACAGACGAAAGACTCAGAGAAAATAACGGAACTCATATGAATAGTTTAAACCTTGCCCCTCAGTCTAACAACAAAGATTTATACATAAGTGAGGCACTGCATATGCAAATAGAGGAGCAGAGAAGACTAAATGAGCAACTTGAGGTGCAAAGACTTCTGCAGCTACGTATAGAGGCTCAAGGAAAATACCTTCAGGCTGTGTTGGAGAAAGCTCAAGAAACACTTGGAAGACAGAATTTGGGAGCAGTAGGACTTGAAGCTACCAAACTTCAACTCTCAGAGCTAGTGTCAAAAGTGTCCTCTCAGTGTCTGAATTCAGCATTTTCAGATCGGCTGAAGGAGATACAAGGATTTAGCCCCCACCAACAAACACAAACCAACCAGCCAAATACAAATGACTGTTCCATGGACAGTTGCCTCACATCTTGTGAGGGATCACAAAAGGAGCAAGAGATACAAAATGGAGGGATGAGCTTAAGACCCTTCAATGTTCACACATTCATGGAAAGAAAGGAAGTCATAGAGGGTCCAAATCTTAATAATCTACCAAACACTGACCTCAATTGGTGTGATCCAGTGAAGAAGAATACCTTCCTTACCCCATTGAGCATGCATGCAGATAAAAGAAGTCCAAGCAACTTGTCTATGAGCATTGGACTTGAAGGAGAAACTGAGAATGGAAGCACCATTAGGACAGAATCAGTGAAACCGGTGGCTGATAAAGTTTCTCAAGATTATGGATTGCCATCTAATTACTTTGCTGCTTCAAAACTGGACCTAACCACTGAAGATAATAAAGACACTAAAACGAGTTGTAAACAACTGGACTTGAATGGATTCAGTTGGAACTGAAAAAAGAAAGGACAACGGAAGTACACAAAGCAAGGCAACTCCAATGGCAGGAACAATGTATTTAATGTAAACAATGTATGTATCAGCTGCTGTTTCTTTCAGCTCATGGTGGTCACTAGCCAAATATCAGTTACTTTTAGTAGAATGCAAAATTGCAACTAACAAATTTGTAAGCAGTGATTATAGTGGATAGAGTATCGTTTCTCTCTCTCTCTCTCTATATCTATCTATATATATATATATATGCTTTATTCAAAGTTTAAGACATGTAAGCCTGACATGTATTTGACATATGCCGCATATA

Coding sequences of Glyma12g09490

Limit To All Plant Sequences

>Glyma12g09490.1   sequence type=CDS   gene model=Glyma12g09490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTACACTCATCAGCAACATCAAGGAAAGAACATTCACTCTTCTTCCAGAATGCCAATCCCTTCTGAGAGGCAGATGTTCCTTCAAACAGGAAATGGCTCTGGTGATTCTGGACTTGTTCTCTCAACTGATGCTAAGCCTAGATTGAAATGGACACCTGATCTTCATGCAAGGTTTATAGAAGCTGTGCAGCAATTAGGAGGAGCTGACAAGGCAACTCCAAAAACGGTAATGAAACTCATAGGGATTCCGGGTCTTACCTTATATCATCTGAAGAGCCATCTCCAGAAATACAGATTGAGCAAGAGTCTGCATGGACAAAGTAACAATATGACACACAAAATAACCATAAATTCAGGTGCAGCAACAGACGAAAGACTCAGAGAAAATAACGGAACTCATATGAATAGTTTAAACCTTGCCCCTCAGTCTAACAACAAAGATTTATACATAAGTGAGGCACTGCATATGCAAATAGAGGAGCAGAGAAGACTAAATGAGCAACTTGAGGTGCAAAGACTTCTGCAGCTACGTATAGAGGCTCAAGGAAAATACCTTCAGGCTGTGTTGGAGAAAGCTCAAGAAACACTTGGAAGACAGAATTTGGGAGCAGTAGGACTTGAAGCTACCAAACTTCAACTCTCAGAGCTAGTGTCAAAAGTGTCCTCTCAGTGTCTGAATTCAGCATTTTCAGATCGGCTGAAGGAGATACAAGGATTTAGCCCCCACCAACAAACACAAACCAACCAGCCAAATACAAATGACTGTTCCATGGACAGTTGCCTCACATCTTGTGAGGGATCACAAAAGGAGCAAGAGATACAAAATGGAGGGATGAGCTTAAGACCCTTCAATGTTCACACATTCATGGAAAGAAAGGAAGTCATAGAGGGTCCAAATCTTAATAATCTACCAAACACTGACCTCAATTGGTGTGATCCAGTGAAGAAGAATACCTTCCTTACCCCATTGAGCATGCATGCAGATAAAAGAAGTCCAAGCAACTTGTCTATGAGCATTGGACTTGAAGGAGAAACTGAGAATGGAAGCACCATTAGGACAGAATCAGTGAAACCGGTGGCTGATAAAGTTTCTCAAGATTATGGATTGCCATCTAATTACTTTGCTGCTTCAAAACTGGACCTAACCACTGAAGATAATAAAGACACTAAAACGAGTTGTAAACAACTGGACTTGAATGGATTCAGTTGGAACTGA

>Glyma12g09490.2   sequence type=CDS   gene model=Glyma12g09490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTACACTCATCAGCAACATCAAGGAAAGAACATTCACTCTTCTTCCAGAATGCCAATCCCTTCTGAGAGGCAGATGTTCCTTCAAACAGGAAATGGCTCTGGTGATTCTGGACTTGTTCTCTCAACTGATGCTAAGCCTAGATTGAAATGGACACCTGATCTTCATGCAAGGTTTATAGAAGCTGTGCAGCAATTAGGAGGAGCTGACAAGGCAACTCCAAAAACGGTAATGAAACTCATAGGGATTCCGGGTCTTACCTTATATCATCTGAAGAGCCATCTCCAGAAATACAGATTGAGCAAGAGTCTGCATGGACAAAGTAACAATATGACACACAAAATAACCATAAATTCAGGTGCAGCAACAGACGAAAGACTCAGAGAAAATAACGGAACTCATATGAATAGTTTAAACCTTGCCCCTCAGTCTAACAACAAAGATTTATACATAAGTGAGGCACTGCATATGCAAATAGAGGAGCAGAGAAGACTAAATGAGCAACTTGAGGTGCAAAGACTTCTGCAGCTACGTATAGAGGCTCAAGGAAAATACCTTCAGGCTGTGTTGGAGAAAGCTCAAGAAACACTTGGAAGACAGAATTTGGGAGCAGTAGGACTTGAAGCTACCAAACTTCAACTCTCAGAGCTAGTGTCAAAAGTGTCCTCTCAGTGTCTGAATTCAGCATTTTCAGATCGGCTGAAGGAGATACAAGGATTTAGCCCCCACCAACAAACACAAACCAACCAGCCAAATACAAATGACTGTTCCATGGACAGTTGCCTCACATCTTGTGAGGGATCACAAAAGGAGCAAGAGATACAAAATGGAGGGATGAGCTTAAGACCCTTCAATGTTCACACATTCATGGAAAGAAAGGAAGTCATAGAGGGTCCAAATCTTAATAATCTACCAAACACTGACCTCAATTGGTGTGATCCAGTGAAGAAGAATACCTTCCTTACCCCATTGAGCATGCATGCAGATAAAAGAAGTCCAAGCAACTTGTCTATGAGCATTGGACTTGAAGGAGAAACTGAGAATGGAAGCACCATTAGGACAGAATCAGTGAAACCGGTGGCTGATAAAGTTTCTCAAGATTATGGATTGCCATCTAATTACTTTGCTGCTTCAAAACTGGACCTAACCACTGAAGATAATAAAGACACTAAAACGAGTTGTAAACAACTGGACTTGAATGGATTCAGTTGGAACTGA

Predicted protein sequences of Glyma12g09490

Limit To All Plant Sequences

>Glyma12g09490.1   sequence type=predicted peptide   gene model=Glyma12g09490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYTHQQHQGKNIHSSSRMPIPSERQMFLQTGNGSGDSGLVLSTDAKPRLKWTPDLHARFIEAVQQLGGADKATPKTVMKLIGIPGLTLYHLKSHLQKYRLSKSLHGQSNNMTHKITINSGAATDERLRENNGTHMNSLNLAPQSNNKDLYISEALHMQIEEQRRLNEQLEVQRLLQLRIEAQGKYLQAVLEKAQETLGRQNLGAVGLEATKLQLSELVSKVSSQCLNSAFSDRLKEIQGFSPHQQTQTNQPNTNDCSMDSCLTSCEGSQKEQEIQNGGMSLRPFNVHTFMERKEVIEGPNLNNLPNTDLNWCDPVKKNTFLTPLSMHADKRSPSNLSMSIGLEGETENGSTIRTESVKPVADKVSQDYGLPSNYFAASKLDLTTEDNKDTKTSCKQLDLNGFSWN*

>Glyma12g09490.2   sequence type=predicted peptide   gene model=Glyma12g09490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYTHQQHQGKNIHSSSRMPIPSERQMFLQTGNGSGDSGLVLSTDAKPRLKWTPDLHARFIEAVQQLGGADKATPKTVMKLIGIPGLTLYHLKSHLQKYRLSKSLHGQSNNMTHKITINSGAATDERLRENNGTHMNSLNLAPQSNNKDLYISEALHMQIEEQRRLNEQLEVQRLLQLRIEAQGKYLQAVLEKAQETLGRQNLGAVGLEATKLQLSELVSKVSSQCLNSAFSDRLKEIQGFSPHQQTQTNQPNTNDCSMDSCLTSCEGSQKEQEIQNGGMSLRPFNVHTFMERKEVIEGPNLNNLPNTDLNWCDPVKKNTFLTPLSMHADKRSPSNLSMSIGLEGETENGSTIRTESVKPVADKVSQDYGLPSNYFAASKLDLTTEDNKDTKTSCKQLDLNGFSWN*

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