Glyma12g09400 - SoyBase

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Report for Sequence Feature Glyma12g09400

Feature Type:	gene_model
Chromosome:	Gm12
Start:	7168483
stop:	7172381
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g09400

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G08290	AT	Annotation by Michelle Graham. TAIR10: WIP domain protein 3 \| chr1:2610680-2613180 REVERSE LENGTH=337	SoyBase	E_val: 5.00E-123	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
PTHR10593	Panther	SERINE/THREONINE-PROTEIN KINASE RIO	JGI		ISS
UniRef100_B9SCR9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: TRANSPARENT TESTA 1 protein, putative n=1 Tax=Ricinus communis RepID=B9SCR9_RICCO	SoyBase	E_val: 7.00E-154	ISS
UniRef100_C6TEB1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TEB1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma12g09400

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g09400

Paralog	Evidence	Comments
Glyma11g19060	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g09400 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g088400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g09400

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma12g09400

Limit To All Plant Sequences

>Glyma12g09400.1   sequence type=CDS   gene model=Glyma12g09400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTTTGATGGAGTGCAATGTGGAGGACAATAAGAATCTATACCTTCATGCTCCTACTTTCATTGAGTGGCTTAAACCATGTTCTTCTCCTAATTCATATCTAAATAATTCCAATACAATATCATACTCATCTTCTTCTTCTCCTTCTTCATCTTCTTTTTCTCTTACTCAGAATGAGTTTGTTCAGGAAACTATCCAATTCTTGCCAATTTTAAGTGAGAAGGCCTCAAAAGATGAAGATCAAAGTTTTGAGGTGAAAGAGGAAAAGGTTGAACAAGTAACTGTGGCTTTGCACATTGGATTGCCTGACAGTAATAAAGGGCATGCTGATGAGGTTGATGAGAAGATGATTTTCCATGTTAAGGAAGAAGAAGAGTCATCAAAGAGAAGCTTCCATGGTTGCTCCTTTAACAACCAAGAGAGAAGGTTTTGGATTCCAACTCCTGCACAGATCCTTGTTGGACCTATGCAGTTTGCTTGCTCCATTTGTAGCAAGACCTTCAATAGGTATAACAACATGCAGATGCATATGTGGGGGCATGGATCAGAATTTAGGAAAGGACCAGACTCACTCAAAGGAACACAACCAGCTGCAATGTTAAGGTTACCATGCTATTGCTGTGCTCAAGGATGCAAGAACAACATCAATCATCCAAGGGCCAAGCCATTGAAGGACTTCAGAACCCTCCAAACCCATTACAAAAGAAAACATGGGACAAAGCCATTCATGTGCAGAAAATGTGGGAAAACATTTGCAGTCAAAGGGGATTGGAGGACTCATGAGAAGAACTGTGGCAAGTTGTGGTATTGCACTTGTGGCTCAGACTTCAAGCACAAGAGATCCCTAAAGGATCATATTAGGTCTTTTGGAAAGGGACATAACCCTCATCCTCCCTTTGAAGCTTTTGAGGATGAGAAGGAATGCATTACTGGCTCTGATGAAGATGAAGTTAATGCTCATCATACATGA

Predicted protein sequences of Glyma12g09400

Limit To All Plant Sequences

>Glyma12g09400.1   sequence type=predicted peptide   gene model=Glyma12g09400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGLMECNVEDNKNLYLHAPTFIEWLKPCSSPNSYLNNSNTISYSSSSSPSSSSFSLTQNEFVQETIQFLPILSEKASKDEDQSFEVKEEKVEQVTVALHIGLPDSNKGHADEVDEKMIFHVKEEEESSKRSFHGCSFNNQERRFWIPTPAQILVGPMQFACSICSKTFNRYNNMQMHMWGHGSEFRKGPDSLKGTQPAAMLRLPCYCCAQGCKNNINHPRAKPLKDFRTLQTHYKRKHGTKPFMCRKCGKTFAVKGDWRTHEKNCGKLWYCTCGSDFKHKRSLKDHIRSFGKGHNPHPPFEAFEDEKECITGSDEDEVNAHHT*

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