Glyma12g09270 - SoyBase

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Report for Sequence Feature Glyma12g09270

Feature Type:	gene_model
Chromosome:	Gm12
Start:	7086560
stop:	7093723
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g09270

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G33790	AT	Annotation by Michelle Graham. TAIR10: Jojoba acyl CoA reductase-related male sterility protein \| chr4:16204325-16207891 REVERSE LENGTH=493	SoyBase	E_val: 0	ISS
GO:0009556	GO-bp	Annotation by Michelle Graham. GO Biological Process: microsporogenesis	SoyBase	N/A	ISS
GO:0010025	GO-bp	Annotation by Michelle Graham. GO Biological Process: wax biosynthetic process	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005783	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0016620	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	SoyBase	N/A	ISS
GO:0016627	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on the CH-CH group of donors	SoyBase	N/A	ISS
GO:0080019	GO-mf	Annotation by Michelle Graham. GO Molecular Function: fatty-acyl-CoA reductase (alcohol-forming) activity	SoyBase	N/A	ISS
KOG1221	KOG	Acyl-CoA reductase	JGI		ISS
PTHR11011	Panther	MALE STERILITY PROTEIN 2-RELATED	JGI		ISS
PTHR11011:SF1	Panther	MALE STERILITY PROTEIN 2	JGI		ISS
PF03015	PFAM	Male sterility protein	JGI		ISS
PF07993	PFAM	Male sterility protein	JGI		ISS
UniRef100_G7IRD9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Fatty acyl-CoA reductase n=1 Tax=Medicago truncatula RepID=G7IRD9_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1LRE5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LRE5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma12g09270

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g09270

Paralog	Evidence	Comments
Glyma11g19150	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g09270 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g087400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g09270

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma12g09270

Limit To All Plant Sequences

>Glyma12g09270.1   sequence type=CDS   gene model=Glyma12g09270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGTTGGGAAGCATACTCCATTTTCTTCAGGACAAGAACATTTTGATCACTGGAGCCACTGGCTTTCTTGCCAAAGTTTTGTTGGAGAAGATATTGAGGGTCCAACCAAATGTTAAGAAGCTTTACCTTCTTCTAAGAGCTGCAGATGCCAAATCTGCCACTCATCGCTTGAACAATGAGATCATAGGGAAGGATTTGTTTAGGGTACTAAAGGAGAAATTGGGTGCAAATTTTAATTCCTTTGTCTCGAAAAAGTTGACTCTGGTACCCGGGGACATCTCTCGTGAAGACTTGGGATTGGAGGATTCCATTCTAAGGGAAGAGATTTATGATCAAACAGATGTCATTATTAACTTAGCTGCAACAACTAACTTTGATGAAAGGTATGATATATCGTTGGGTCTAAATACCTTTGGTGTTAAGTATGTCATCAACTTCGCCAAAAAATGTACCAAACTCGAGGTTCTTGTGCATGTATCAACAGCCTATGTATGTGGTGAGGGAGGCCGAGAAGGGCTCATATTAGAGAAACCATATCATTTGGGTGATTCACTGAATGGAGTGTCTGGATTAGACATTAATGCAGAAGAGAAAGTTGTGCGTGACAAATTAAGTGAGTTACAACAACTGGGGGCCACAGAAAAGGAAATTAAAGAGGTTATGAAGGACTTGGGCATTAGCAGGGCAAAGTTATATGGATGGCCAAACACATATGTATTCACCAAGGCAATGGGAGAGATGCTTGTGGAGCAACTAAAAGGAAACTTATCCGTTGTGACCATTCGTCCCACCATTGTTACCAGCACATTCAAAGAACCTTTCCCTGGTTGGGCTGAAGGTGTAAGAACCATTGACAGTTTAGCTGTAGCTTATGGGAAAGGAAAATTAACATGCTTCCTTGGAGATCTCAAAGCAATTGTTGATGCGATACCAGCTGACATGGTGGTGAATGCAATACTTGTGGCCATGGTGGCTCATGCAAATCATCCTAGTGATGATGTTATATATCATGTTGGTTCCTCTGTTAGAAGACCACTAAGATATGGCAATCTTCAAGAGTATGGCTTTAGATATTTCACAGCAAAACCATGCATAAACAAGGATGGAAGGCCAGTTAAGGTTGGAAAAGTTACAGTGTTGAGCAACATGGATAGCTTCAGAAGATATATGTTCATTCGCTACCTGCTTGTGTTAAAGGGACTTGAGCTGGCCAATACTGCATTTTGCCAGTATTTCCAAGGAACATATCTTAATCTCAATAGGAAGATTCAGATTGTGATGCGGTTGGTGGACCTTTACAAGCCTTACTTGTTCTTTAAAGCTGCATTTGATGATATGAACACAGAGAAGTTGAGAATGGCAGCAAGACAAGGTGGGGTGGAGACAGATTTGTTTTATTTTGACCCCGAACTGATTGATTGGGAAGATTACTTTTTGAACATCCATCTTCCTGGTGTGGTGAAGTACATTTTGAAGTGA

Predicted protein sequences of Glyma12g09270

Limit To All Plant Sequences

>Glyma12g09270.1   sequence type=predicted peptide   gene model=Glyma12g09270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MELGSILHFLQDKNILITGATGFLAKVLLEKILRVQPNVKKLYLLLRAADAKSATHRLNNEIIGKDLFRVLKEKLGANFNSFVSKKLTLVPGDISREDLGLEDSILREEIYDQTDVIINLAATTNFDERYDISLGLNTFGVKYVINFAKKCTKLEVLVHVSTAYVCGEGGREGLILEKPYHLGDSLNGVSGLDINAEEKVVRDKLSELQQLGATEKEIKEVMKDLGISRAKLYGWPNTYVFTKAMGEMLVEQLKGNLSVVTIRPTIVTSTFKEPFPGWAEGVRTIDSLAVAYGKGKLTCFLGDLKAIVDAIPADMVVNAILVAMVAHANHPSDDVIYHVGSSVRRPLRYGNLQEYGFRYFTAKPCINKDGRPVKVGKVTVLSNMDSFRRYMFIRYLLVLKGLELANTAFCQYFQGTYLNLNRKIQIVMRLVDLYKPYLFFKAAFDDMNTEKLRMAARQGGVETDLFYFDPELIDWEDYFLNIHLPGVVKYILK*

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