Report for Sequence Feature Glyma12g09250
Feature Type: gene_model
Chromosome: Gm12
Start: 7072515
stop: 7080235
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma12g09250
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G20890 AT
Annotation by Michelle Graham. TAIR10: TCP-1/cpn60 chaperonin family protein | chr5:7087020-7089906 REVERSE LENGTH=527
SoyBase E_val: 0 ISS
GO:0006094 GO-bp
Annotation by Michelle Graham. GO Biological Process: gluconeogenesis
SoyBase N/A ISS
GO:0006364 GO-bp
Annotation by Michelle Graham. GO Biological Process: rRNA processing
SoyBase N/A ISS
GO:0006457 GO-bp
Annotation by Michelle Graham. GO Biological Process: protein folding
SoyBase N/A ISS
GO:0007010 GO-bp
Annotation by Michelle Graham. GO Biological Process: cytoskeleton organization
SoyBase N/A ISS
GO:0009664 GO-bp
Annotation by Michelle Graham. GO Biological Process: plant-type cell wall organization
SoyBase N/A ISS
GO:0010498 GO-bp
Annotation by Michelle Graham. GO Biological Process: proteasomal protein catabolic process
SoyBase N/A ISS
GO:0042545 GO-bp
Annotation by Michelle Graham. GO Biological Process: cell wall modification
SoyBase N/A ISS
GO:0044267 GO-bp
Annotation by Michelle Graham. GO Biological Process: cellular protein metabolic process
SoyBase N/A ISS
GO:0005618 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cell wall
SoyBase N/A ISS
GO:0005737 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm
SoyBase N/A ISS
GO:0005829 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytosol
SoyBase N/A ISS
GO:0046658 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: anchored to plasma membrane
SoyBase N/A ISS
GO:0005524 GO-mf
Annotation by Michelle Graham. GO Molecular Function: ATP binding
SoyBase N/A ISS
GO:0051082 GO-mf
Annotation by Michelle Graham. GO Molecular Function: unfolded protein binding
SoyBase N/A ISS
KOG0363
KOG
Chaperonin complex component, TCP-1 beta subunit (CCT2)
JGI ISS
PTHR11353 Panther
CHAPERONIN
JGI ISS
PTHR11353:SF23 Panther
CHAPERONIN CONTAINING T-COMPLEX PROTEIN 1, BETA SUBUNIT, TCPB
JGI ISS
PF00118 PFAM
TCP-1/cpn60 chaperonin family
JGI ISS
UniRef100_G7KRA6 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: T-complex protein 1 subunit beta n=1 Tax=Medicago truncatula RepID=G7KRA6_MEDTR
SoyBase E_val: 0 ISS
UniRef100_I1LRE4 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LRE4_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma12g09250
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma12g09250
Paralog Evidence Comments
Glyma11g19220 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma12g09250 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.12g087300 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma12g09250
Coding sequences of Glyma12g09250
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma12g09250.1 sequence type=CDS gene model=Glyma12g09250 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCGATTGATAATATTTTTAAAAATGAAGCTAGTGAAGAAAAAGGAGAGCGTGCCAGAATGGCTTCTTTTGTTGGAGCCATGGCTATTGCTGACTTAGTGAAGACAACCTTGGGGCCAAAGGGAATGGATAAAATTTTGCAGTCAACAGGTAGAGGACGTGAAGTTACTGTCACGAATGATGGCGCTACAATCTTGAAGTCCCTCCATATTGATAACCCAGCTGCTAAAGTCCTTGTTGACATATCAAAAGTTCAAGATGATGAAGTTGGGGATGGAACTACCTCAGTTGTTGTGTTGGCTGGTGAACTTTTAAGGGAGGCAGAAAAGCTGGTTGCAACCAAGATTCATCCGATGACAATAATATCAGGTTTTCGAATGGCAGCAGAGTGTGCTCGTAATGCTTTGTTGGAGAAGGTTGTGGACAATAAAGCAGATTCTGAGAAATTCAGGTCAGACTTATTGAACATTGCAATGACTACTTTGAGCTCCAAGATTCTCTCACAGGACAAGGAGCATTTTGCAAAATTAGCTGTGGATGCTGTAATGAGACTAAAGGGAAGCACCAATTTAGAATCTATCCAGATTATAAAGAAACCTGGAGGCTCATTAATGGATTCATTCTTAGATGAAGGATTCATTCTTGACAAGAAAATTGGTATTGGACAACCCAAACGTATAGAGAATGCAAAGATACTGGTGGCAAACACTGCCATGGACACAGACAAAGTGAAGATATATGGTGCACGTGTTCGTGTTGATTCTATGGCTAGAGTTGCTCAGATTGAAACAGCTGAGAAAGAGAAAATGAGAGAAAAGGTGCAGAAGATAATAGGTCATGGTATCAACTGTTTTGTTAACAGACAGTTGATTTACAATTTTCCAGAGGAGCTCTTTGCTGATGCAGGAATATTGGCTATTGAGCATGCTGATTTTGATGGTATTGAGCGTCTGGCTTTGGTAACTGGTGGTGAAATTGCGTCAACCTTTGACAATCCTGAGTCTGTTAAGCTTGGGCATTGCGACCTTATTGAGGAGATTATGATTGGCGAGGATAAACTGATTCATTTTTCTGGTGTTGCTATGGGGCAGGCATGTACAATAGTTTTGAGAGGTGCTAGCCACCATGTTCTTGATGAGGCTGAGAGGTCATTGCATGATGCCTTGTGTGTGCTATCTCAGACTGTCAATGACAGCAGGGTGTTGCTTGGAGGTGGGTGGCCTGAGATGGTGATGGCAAAAGAAGTTGATGCATTGGCTAAGAAAACTCCTGGAAAGAAGTCTCTTGCTATTGAGGCATTCTCCCGTGCACTCTTGGCTATTCCAACAATCATTGCTGATAATGCTGGTTTGGACAGTGCTGAGTTGATTTCTCAGCTCCGTGCAGAGCATCAGAAGGAGGGCTGTACTGCTGGAATTGATGTTATTTCTGGCTCTGTTGGAGACATGGCTGAACGGGGGATATGCGAAGCATTCAAAGTCAAGCAAGCTGTATTGCTATCTTCAACAGAGGCAGCTGAGATGATCCTTAGAGTTGATGAAATCATCACGTGTGCTCCGAGGAGGAGAGAAGACCGAATGTAA
Predicted protein sequences of Glyma12g09250
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma12g09250.1 sequence type=predicted peptide gene model=Glyma12g09250 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAIDNIFKNEASEEKGERARMASFVGAMAIADLVKTTLGPKGMDKILQSTGRGREVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVATKIHPMTIISGFRMAAECARNALLEKVVDNKADSEKFRSDLLNIAMTTLSSKILSQDKEHFAKLAVDAVMRLKGSTNLESIQIIKKPGGSLMDSFLDEGFILDKKIGIGQPKRIENAKILVANTAMDTDKVKIYGARVRVDSMARVAQIETAEKEKMREKVQKIIGHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCDLIEEIMIGEDKLIHFSGVAMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLLGGGWPEMVMAKEVDALAKKTPGKKSLAIEAFSRALLAIPTIIADNAGLDSAELISQLRAEHQKEGCTAGIDVISGSVGDMAERGICEAFKVKQAVLLSSTEAAEMILRVDEIITCAPRRREDRM*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
