Glyma12g09200 - SoyBase

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Report for Sequence Feature Glyma12g09200

Feature Type:	gene_model
Chromosome:	Gm12
Start:	6977759
stop:	6981372
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g09200

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G44620	AT	Annotation by Michelle Graham. TAIR10: protein tyrosine phosphatases;protein tyrosine phosphatases \| chr3:16193858-16195422 FORWARD LENGTH=239	SoyBase	E_val: 7.00E-92	ISS
GO:0006470	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein dephosphorylation	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0004725	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein tyrosine phosphatase activity	SoyBase	N/A	ISS
KOG3217	KOG	Protein tyrosine phosphatase	JGI		ISS
PTHR11717	Panther	LOW MOLECULAR WEIGHT PROTEIN TYROSINE PHOSPHATASE	JGI		ISS
PTHR11717:SF7	Panther	LOW MOLECULAR WEIGHT PROTEIN-TYROSINE-PHOSPHATASE 1	JGI		ISS
PF01451	PFAM	Low molecular weight phosphotyrosine protein phosphatase	JGI		ISS
UniRef100_G7JKW9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Low molecular weight protein-tyrosine-phosphatase slr0328 n=1 Tax=Medicago truncatula RepID=G7JKW9_MEDTR	SoyBase	E_val: 1.00E-108	ISS
UniRef100_I1LRD8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LRD8_SOYBN	SoyBase	E_val: 5.00E-178	ISS

Expression Patterns of Glyma12g09200

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma12g09200 not represented in the dataset	Glyma12g09200 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g09200

Paralog	Evidence	Comments
Glyma11g19280	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g09200 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g086800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g09200

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma12g09200

Limit To All Plant Sequences

>Glyma12g09200.5   sequence type=transcript   gene model=Glyma12g09200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAAAGAGAAAAAAAAAAAACCAAGAGGATAATTTTCATTGGGGGGCGTCTCAAACAAAAAATTATTGGGTGTGAAGCATGTAGTGTAGCTCCTCCAACGTCAAATTTGAGGACAGTGTCGTGTCGAGTCACCACCAGTGAAGGAATAATGAGCGTCATTAATTTACGATTTTGCCACTGTTCCCAACTCCTCCTCCTCTCACCAAACCCGAAGCTCTCTTCTTCCTCGCAAACTGCAAAGTTAACTCTGAGAAAGAAAAACCCAACGACCCCTTTTGCCATTTCCTGCAAAACCCGTTTCTCTTCTTCAATTCGCGCGTCCATGGCTTCACCCTCCATCACAGACGCCGAAACAAAGCCGTTTTCTGTTCTCTTCGTGTGCCTCGGCAACATCTGCAGAAGCCCCGCTGCTGAAGGAGTCTTCACTGACTTAGTCAACAAAAGGGACCTCAATTCGAAGTTCAAAATCGACTCTGCTGGCACCATCAATTACCACGAGGGAAATGAAGCGGATTCGAGAATGAGGGCAGCTTCAAAAAGGCGTGGGATTCAGATAACTTCTATTTCGAGGCCAATCAAGCCCTCTGATTTCGTTGACTTTGACCTCATTCTTGCTATGGACAAACAGAACAGAGAGGACATATTTGAGGCCTTTAATAGATGGAAAGATAGACATTCTTTACCGGATGGCGCACATAAAAAGGTTAAGTTGATGTGCTCGTACTGTAAGAAGCATGATGAAAGTGAAGTTCCGGATCCTTATTATGGTGGACCACAAGGGTTTGAGAAGGTGTTGGATTTGCTTGAAGATGCTTGCGGATCATTACTGGAAACCATTTTGGCAGAAAACAAACATGTACAACAATCCTGATACCTTTATTAATGGCCAGAAGATCCAATCATTGGTTTTCATAGATGTCAAAGTACCTTCTTGTTTCAGTGGTTCACTACCCTGAACCACCCACGATTTATATATATGGAATTTCGAAACTTCTTGCCATACTTATCTAACAATTGGAATCATAAGTTCGAATAACGGATATTCTTAGTTACATACAACCGCTGCATCGAACCCTCCAATTCAGATTAACTTAGTTGGCAGCGTTTATCTGGCTTATCTCTCTTTTTCGTTTTGAAAAATTAATTTCGTCTCTATTTTTTCTTTTCCTATTTTGTTCAGATGAACTAAATTCCTTAACAAACCTAGATAGGAAATTTTAATGCTGAAGCAGATTATTAGTGTATGTCAGTATGGTGCTTGAATCCTATATATTCTAGTTTGTGGCAGCCAAATATAATATTTTACAAGGAATAAACTTTCTGTGC

>Glyma12g09200.6   sequence type=transcript   gene model=Glyma12g09200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAAAGAGAAAAAAAAAAAACCAAGAGGATAATTTTCATTGGGGGGCGTCTCAAACAAAAAATTATTGGGTGTGAAGCATGTAGTGTAGCTCCTCCAACGTCAAATTTGAGGACAGTGTCGTGTCGAGTCACCACCAGTGAAGGAATAATGAGCGTCATTAATTTACGATTTTGCCACTGTTCCCAACTCCTCCTCCTCTCACCAAACCCGAAGCTCTCTTCTTCCTCGCAAACTGCAAAGTTAACTCTGAGAAAGAAAAACCCAACGACCCCTTTTGCCATTTCCTGCAAAACCCGTTTCTCTTCTTCAATTCGCGCGTCCATGGCTTCACCCTCCATCACAGACGCCGAAACAAAGCCGTTTTCTGTTCTCTTCGTGTGCCTCGGCAACATCTGCAGAAGCCCCGCTGCTGAAGGAGTCTTCACTGACTTAGTCAACAAAAGGGACCTCAATTCGAAGTTCAAAATCGACTCTGCTGGCACCATCAATTACCACGAGGGAAATGAAGCGGATTCGAGAATGAGGGCAGCTTCAAAAAGGCGTGGGATTCAGATAACTTCTATTTCGAGGCCAATCAAGCCCTCTGATTTCGTTGACTTTGACCTCATTCTTGCTATGGACAAACAGAACAGAGAGGACATATTTGAGGCCTTTAATAGATGGAAAGATAGACATTCTTTACCGGATGGCGCACATAAAAAGGTTAAGTTGATGTGCTCGTACTGTAAGAAGCATGATGAAAGTGAAGTTCCGGATCCTTATTATGGTGGACCACAAGGGTTTGAGAAGGTATGCTATTCATGTTAGGGTATGGGTTGGCACTTGGTGCATTTTGTAGGTTGAAGTAGAGTGTTGCTTCCTAGTGCTTTGATAGTTTTGAATGATTATGGTATTTGGTTCAACGAATTTGATTAAGTCACTCGGAAAGAAGACCAAGCATTATATGGACATGTCAAGGTGGAATTGAGGGTTGAAACCATCCCAATAGCTTAAACTGTCTAGTGAAGACGCCCCAAAACAGTTTTATACTATATGTCTAATATACCACCTTATGCTATAGCCCCCTTAGGCTTCAA

Coding sequences of Glyma12g09200

Limit To All Plant Sequences

>Glyma12g09200.4   sequence type=CDS   gene model=Glyma12g09200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAAAGAGAAAAAAAAAAAACCAAGAGGATAATTTTCATTGGGGGGCGTCTCAAACAAAAAATTATTGGGTGTGAAGCATGTAGTGTAGCTCCTCCAACGTCAAATTTGAGGACAGTGTCGTGTCGAGTCACCACCAGTGAAGGAATAATGAGCGTCATTAATTTACGATTTTGCCACTGTTCCCAACTCCTCCTCCTCTCACCAAACCCGAAGCTCTCTTCTTCCTCGCAAACTGCAAAGTTAACTCTGAGAAAGAAAAACCCAACGACCCCTTTTGCCATTTCCTGCAAAACCCGTTTCTCTTCTTCAATTCGCGCGTCCATGGCTTCACCCTCCATCACAGACGCCGAAACAAAGCCGTTTTCTGTTCTCTTCGTGTGCCTCGGCAACATCTGCAGAAGCCCCGCTGCTGAAGGAGTCTTCACTGACTTAGTCAACAAAAGGGACCTCAATTCGAAGTTCAAAATCGACTCTGCTGGCACCATCAATTACCACGAGGGAAATGAAGCGGATTCGAGAATGAGGGCAGCTTCAAAAAGGCGTGGGATTCAGATAACTTCTATTTCGAGGCCAATCAAGCCCTCTGATTTCGTTGACTTTGACCTCATTCTTGCTATGGACAAACAGAACAGAGAGGACATATTTGAGGCCTTTAATAGATGGAAAGATAGACATTCTTTACCGGATGGCGCACATAAAAAGGTTAAGTTGATGTGCTCGTACTGTAAGAAGCATGATGAAAGTGAAGTTCCGGATCCTTATTATGGTGGACCACAAGGGTTTGAGAAGCAGGTGTTGGATTTGCTTGAAGATGCTTGCGGATCATTACTGGAAACCATTTTGGCAGAAAACAAACATGTACAACAATCCTGA

>Glyma12g09200.5   sequence type=CDS   gene model=Glyma12g09200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAAAGAGAAAAAAAAAAAACCAAGAGGATAATTTTCATTGGGGGGCGTCTCAAACAAAAAATTATTGGGTGTGAAGCATGTAGTGTAGCTCCTCCAACGTCAAATTTGAGGACAGTGTCGTGTCGAGTCACCACCAGTGAAGGAATAATGAGCGTCATTAATTTACGATTTTGCCACTGTTCCCAACTCCTCCTCCTCTCACCAAACCCGAAGCTCTCTTCTTCCTCGCAAACTGCAAAGTTAACTCTGAGAAAGAAAAACCCAACGACCCCTTTTGCCATTTCCTGCAAAACCCGTTTCTCTTCTTCAATTCGCGCGTCCATGGCTTCACCCTCCATCACAGACGCCGAAACAAAGCCGTTTTCTGTTCTCTTCGTGTGCCTCGGCAACATCTGCAGAAGCCCCGCTGCTGAAGGAGTCTTCACTGACTTAGTCAACAAAAGGGACCTCAATTCGAAGTTCAAAATCGACTCTGCTGGCACCATCAATTACCACGAGGGAAATGAAGCGGATTCGAGAATGAGGGCAGCTTCAAAAAGGCGTGGGATTCAGATAACTTCTATTTCGAGGCCAATCAAGCCCTCTGATTTCGTTGACTTTGACCTCATTCTTGCTATGGACAAACAGAACAGAGAGGACATATTTGAGGCCTTTAATAGATGGAAAGATAGACATTCTTTACCGGATGGCGCACATAAAAAGGTTAAGTTGATGTGCTCGTACTGTAAGAAGCATGATGAAAGTGAAGTTCCGGATCCTTATTATGGTGGACCACAAGGGTTTGAGAAGGTGTTGGATTTGCTTGAAGATGCTTGCGGATCATTACTGGAAACCATTTTGGCAGAAAACAAACATGTACAACAATCCTGA

>Glyma12g09200.6   sequence type=CDS   gene model=Glyma12g09200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAAAGAGAAAAAAAAAAAACCAAGAGGATAATTTTCATTGGGGGGCGTCTCAAACAAAAAATTATTGGGTGTGAAGCATGTAGTGTAGCTCCTCCAACGTCAAATTTGAGGACAGTGTCGTGTCGAGTCACCACCAGTGAAGGAATAATGAGCGTCATTAATTTACGATTTTGCCACTGTTCCCAACTCCTCCTCCTCTCACCAAACCCGAAGCTCTCTTCTTCCTCGCAAACTGCAAAGTTAACTCTGAGAAAGAAAAACCCAACGACCCCTTTTGCCATTTCCTGCAAAACCCGTTTCTCTTCTTCAATTCGCGCGTCCATGGCTTCACCCTCCATCACAGACGCCGAAACAAAGCCGTTTTCTGTTCTCTTCGTGTGCCTCGGCAACATCTGCAGAAGCCCCGCTGCTGAAGGAGTCTTCACTGACTTAGTCAACAAAAGGGACCTCAATTCGAAGTTCAAAATCGACTCTGCTGGCACCATCAATTACCACGAGGGAAATGAAGCGGATTCGAGAATGAGGGCAGCTTCAAAAAGGCGTGGGATTCAGATAACTTCTATTTCGAGGCCAATCAAGCCCTCTGATTTCGTTGACTTTGACCTCATTCTTGCTATGGACAAACAGAACAGAGAGGACATATTTGAGGCCTTTAATAGATGGAAAGATAGACATTCTTTACCGGATGGCGCACATAAAAAGGTTAAGTTGATGTGCTCGTACTGTAAGAAGCATGATGAAAGTGAAGTTCCGGATCCTTATTATGGTGGACCACAAGGGTTTGAGAAGGTATGCTATTCATGTTAG

Predicted protein sequences of Glyma12g09200

Limit To All Plant Sequences

>Glyma12g09200.4   sequence type=predicted peptide   gene model=Glyma12g09200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKREKKKTKRIIFIGGRLKQKIIGCEACSVAPPTSNLRTVSCRVTTSEGIMSVINLRFCHCSQLLLLSPNPKLSSSSQTAKLTLRKKNPTTPFAISCKTRFSSSIRASMASPSITDAETKPFSVLFVCLGNICRSPAAEGVFTDLVNKRDLNSKFKIDSAGTINYHEGNEADSRMRAASKRRGIQITSISRPIKPSDFVDFDLILAMDKQNREDIFEAFNRWKDRHSLPDGAHKKVKLMCSYCKKHDESEVPDPYYGGPQGFEKQVLDLLEDACGSLLETILAENKHVQQS*

>Glyma12g09200.5   sequence type=predicted peptide   gene model=Glyma12g09200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKREKKKTKRIIFIGGRLKQKIIGCEACSVAPPTSNLRTVSCRVTTSEGIMSVINLRFCHCSQLLLLSPNPKLSSSSQTAKLTLRKKNPTTPFAISCKTRFSSSIRASMASPSITDAETKPFSVLFVCLGNICRSPAAEGVFTDLVNKRDLNSKFKIDSAGTINYHEGNEADSRMRAASKRRGIQITSISRPIKPSDFVDFDLILAMDKQNREDIFEAFNRWKDRHSLPDGAHKKVKLMCSYCKKHDESEVPDPYYGGPQGFEKVLDLLEDACGSLLETILAENKHVQQS*

>Glyma12g09200.6   sequence type=predicted peptide   gene model=Glyma12g09200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKREKKKTKRIIFIGGRLKQKIIGCEACSVAPPTSNLRTVSCRVTTSEGIMSVINLRFCHCSQLLLLSPNPKLSSSSQTAKLTLRKKNPTTPFAISCKTRFSSSIRASMASPSITDAETKPFSVLFVCLGNICRSPAAEGVFTDLVNKRDLNSKFKIDSAGTINYHEGNEADSRMRAASKRRGIQITSISRPIKPSDFVDFDLILAMDKQNREDIFEAFNRWKDRHSLPDGAHKKVKLMCSYCKKHDESEVPDPYYGGPQGFEKVCYSC*

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