Glyma12g09170 - SoyBase

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Report for Sequence Feature Glyma12g09170

Feature Type:	gene_model
Chromosome:	Gm12
Start:	6962935
stop:	6964843
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g09170

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G21105	AT	Annotation by Michelle Graham. TAIR10: cytochrome-c oxidases;electron carriers \| chr4:11266273-11266724 FORWARD LENGTH=68	SoyBase	E_val: 1.00E-36	ISS
GO:0006623	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to vacuole	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005774	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane	SoyBase	N/A	ISS
GO:0004129	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cytochrome-c oxidase activity	SoyBase	N/A	ISS
GO:0009055	GO-mf	Annotation by Michelle Graham. GO Molecular Function: electron carrier activity	SoyBase	N/A	ISS
PF02238	PFAM	Cytochrome c oxidase subunit VIIa	JGI		ISS
UniRef100_C6SWY1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SWY1_SOYBN	SoyBase	E_val: 2.00E-41	ISS
UniRef100_Q944S8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Acytochrome-c oxidase/ electron carrier n=1 Tax=Arabidopsis thaliana RepID=Q944S8_ARATH	SoyBase	E_val: 5.00E-34	ISS

Expression Patterns of Glyma12g09170

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g09170

Paralog	Evidence	Comments
Glyma11g19300	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g09170 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g086600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g09170

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma12g09170

Limit To All Plant Sequences

>Glyma12g09170.1   sequence type=CDS   gene model=Glyma12g09170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGGAAGCACCATTCAGACCACGAGAAAAGCTTGCTGAGAAGCAAAAATATTTCCAGAGTATCCACAGGCATACCTACTTGAAGGGACCCATGGATAAGATTACATCTGTGGCCATACCACTGGCTTTGGCTGCAACATCAATTTACATGATTGGACGAGGGATCTATAATATGTCGCATGGAATTGGAAAGAAAGAATGA

Predicted protein sequences of Glyma12g09170

Limit To All Plant Sequences

>Glyma12g09170.1   sequence type=predicted peptide   gene model=Glyma12g09170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSEAPFRPREKLAEKQKYFQSIHRHTYLKGPMDKITSVAIPLALAATSIYMIGRGIYNMSHGIGKKE*

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