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Report for Sequence Feature Glyma12g09160

Feature Type:gene_model
Chromosome:Gm12
Start:6957901
stop:6960870
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma12g09160
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G27740AT Annotation by Michelle Graham. TAIR10: Family of unknown function (DUF662) | chr2:11822800-11823575 FORWARD LENGTH=174 SoyBaseE_val: 4.00E-77ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0010413GO-bp Annotation by Michelle Graham. GO Biological Process: glucuronoxylan metabolic process SoyBaseN/AISS
GO:0045492GO-bp Annotation by Michelle Graham. GO Biological Process: xylan biosynthetic process SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PTHR21470Panther NTKL-BINDING PROTEIN 1 JGI ISS
PF04949PFAM Family of unknown function (DUF662) JGI ISS
UniRef100_I1LRD5UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LRD5_SOYBN SoyBaseE_val: 6.00E-122ISS
UniRef100_Q9SJR4UniRef Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=1 Tax=Arabidopsis thaliana RepID=Q9SJR4_ARATH SoyBaseE_val: 2.00E-63ISS

Expression Patterns of Glyma12g09160
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma12g09160 not represented in the dataset
Glyma12g09160 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g09160
ParalogEvidenceComments
Glyma11g19310 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g09160 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.12g086500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma12g09160
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma12g09160
>Glyma12g09160.1   sequence type=CDS   gene model=Glyma12g09160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAACACCAAAACAGTCATATGAGCAGCAACAACAACAACAACAACCAAATGTGCAGCGAGTGAGGAACTCGGGGATGATTAACAGCAACCAGAGTCCAATGAGGGATGACAAGGAAGAGGAGATGTCAAGATCAGCTTTGGCAATGTTCCGAGCAAAGGAAGAAGAAATTGAAAGGAGAAAAGTTGAGGTGAGGGATAAGGTTCACGCTTATCTCGGTCGAGTAGAGGAGGAAACAAAACGATTGGCTGAGATTAGAGAAGAGCTTGAGGGTCTCACAGATCCATTGAGGAAGGAAGTTGCAATAGTTCGAAAGAAGATAGACAGTGTTAACAAAGAGTTAAAGCCACTGGGCCAAACCTGCCAGAGAAAGGAGAGAGAATACAAGGAAGCCCTTGACGCTTTCAATGAGAAAAACAAGGAAAAAGCTCAACTTGTTACTAAACTAATGGAGCTGGTGACTGAAAGTGAGAAGTTGAGGATGAAGAAGCTGGAGGAGTTAAGCAAAAACGTAGATACCCTGCATTGA
Predicted protein sequences of Glyma12g09160
>Glyma12g09160.1   sequence type=predicted peptide   gene model=Glyma12g09160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATPKQSYEQQQQQQQPNVQRVRNSGMINSNQSPMRDDKEEEMSRSALAMFRAKEEEIERRKVEVRDKVHAYLGRVEEETKRLAEIREELEGLTDPLRKEVAIVRKKIDSVNKELKPLGQTCQRKEREYKEALDAFNEKNKEKAQLVTKLMELVTESEKLRMKKLEELSKNVDTLH*






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