Glyma12g09090 - SoyBase

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Report for Sequence Feature Glyma12g09090

Feature Type:	gene_model
Chromosome:	Gm12
Start:	6885011
stop:	6888906
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g09090

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G44860	AT	Annotation by Michelle Graham. TAIR10: Ribosomal protein L24e family protein \| chr2:18501034-18502128 REVERSE LENGTH=159	SoyBase	E_val: 3.00E-79	ISS
GO:0001510	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA methylation	SoyBase	N/A	ISS
GO:0006364	GO-bp	Annotation by Michelle Graham. GO Biological Process: rRNA processing	SoyBase	N/A	ISS
GO:0006412	GO-bp	Annotation by Michelle Graham. GO Biological Process: translation	SoyBase	N/A	ISS
GO:0042254	GO-bp	Annotation by Michelle Graham. GO Biological Process: ribosome biogenesis	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005730	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleolus	SoyBase	N/A	ISS
GO:0005840	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: ribosome	SoyBase	N/A	ISS
GO:0022625	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosolic large ribosomal subunit	SoyBase	N/A	ISS
GO:0003735	GO-mf	Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome	SoyBase	N/A	ISS
KOG1723	KOG	60s ribosomal protein L30 isolog	JGI		ISS
PTHR10792	Panther	60S RIBOSOMAL PROTEIN L24	JGI		ISS
PTHR10792:SF3	Panther	gb def: Putative ribosomal protein L30 (Fragment)	JGI		ISS
PF01246	PFAM	Ribosomal protein L24e	JGI		ISS
UniRef100_B7FMU0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ribosome biogenesis protein rlp24 n=1 Tax=Medicago truncatula RepID=B7FMU0_MEDTR	SoyBase	E_val: 6.00E-86	ISS
UniRef100_I1LRC9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LRC9_SOYBN	SoyBase	E_val: 1.00E-121	ISS

Expression Patterns of Glyma12g09090

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g09090

Paralog	Evidence	Comments
Glyma11g19410	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g09090 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g085800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g09090

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma12g09090

Limit To All Plant Sequences

>Glyma12g09090.3   sequence type=transcript   gene model=Glyma12g09090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACTTTAAGTAATCTTTCCATACATCCTCATGAGCAGTGAAAGTTTTTCCAATTGGGTCCCATCCAAAGCCAGAGTTGTTGCGCATAAGGGTTGACATCATGTTATACTGGTTTCGAAACCACTTCATCCGACTCAAATAATGACTATAAGTTTTAGGGAATTTAGTTTTTGCATTGAGTTGAGGAAGTATTATTCGTTCTACATTTTGTTTGCTAAGTGACCCATTGGCATCACGCAATCCCCTATTCATAGCATCCACCAAGAGGTGCAACAACTCATTGATTCTCACTGGCTCACGGCCTGCAACCCTCGAAACGTGAATAGCCGTGGCGGCCACCTATTTCTCTGTTTAACGTCTTCACTCATTCTCATTTTCGCCTCAAACTACTTCTTCCACCGATCACTGTTCAGCAGAGAAGTGTTGCCTTGGTCTCTTGAGGTGCAATGAGATTGGAGAAGTGTTGGTTCTGTTCTTCTACCATATACCCTGGACATGGAATCCAGTTTGTTCGTAATGATGCAAAGATTTTTCGGTTTTGTAGATCTAAATGCCACAAAAACTTTAAAATGAAGAGGAACCCTCGGAAAGTAAAATGGACAAAGGCATATAGACGAGTGCATGGAAAGGATATGACACAGGACTCGACCTTTGAGTTTGAGAGAAAGCGAAACAGACCTGAGAGATATGACAGGAATCTTGCTGAGAATGTCCTCAAGGCCATTCCAAAGATTGATAAAATCAGAGTCACCAGGGAGGAGAAACACCATAAGAATAGGATGAAAGGCAAGAAGCAGAAGCTGCAAATGGAGGCAGCTAGGGAGTTGGAGCAGGGCATAAGTCTGGTCAAAGCTCCATCTGTGCTTCAAAAGGACCCTTCTCTCACTTTACCCAAGATCAAAGTTGGGGTTTCTCAACAACAATCAGAGGACAATCATCCCATGGAAGAGTGATGTCATGTCAATGCTGCACTTTCAACCCCAGTTTTGTGATTTTGTGCTTCATAGGTGGATTCGTTGTCCAAATTACAAGTTGGTTCATTGCTGATCCGACATGTGAATGATGCGATTTTGAAACAAAAGTTTTGGCCGTTGAAAATATGTTAGTGATATTGTTTTTGGACACAATAATAGTCCTGTGCGACAGTGAACTATTATATAAACCAAAGCAGAAAGACGTTGCCCAACAAGAAGTCGCCTTGGACTTATTCGAGTATTCAATCTGTTAATCTCAAGTCAAATGTTAAATTTGTAGGTAAGTAAAAGTTCTTTATACTAGGTACTTCACTAATTTGACTGATGAATGCCTATTTAGAACATAGAAGATGCTATTTTGACATCTTAGTCATATTTTTGATGGATTTGGTAATGTCATATCATTCTCAACATCTTTTTATTTTTTATTCCAATAGTAGATCTTATTTTGAGATCTTAAATCATTTTTTTAAGTCTT

Coding sequences of Glyma12g09090

Limit To All Plant Sequences

>Glyma12g09090.2   sequence type=CDS   gene model=Glyma12g09090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGATTGGAGAAGTGTTGGTTCTGTTCTTCTACCATATACCCTGGACATGGAATCCAGTTTGTTCGTAATGATGCAAAGATTTTTCGGTTTTGTAGATCTAAATGCCACAAAAACTTTAAAATGAAGAGGAACCCTCGGAAAGTAAAATGGACAAAGGCATATAGACGAGTGCATGGAAAGGATATGACACAGGACTCGACCTTTGAGTTTGAGAGAAAGCGAAACAGACCTGAGAGATATGACAGGAATCTTGCTGAGAATGTCCTCAAGGCCATTCCAAAGATTGATAAAATCAGAGTCACCAGGGAGGAGAAACACCATAAGAATAGGATGAAAGGCAAGAAGCAGAAGCTGCAAATGGAGGCAGCTAGGGAGTTGGAGCAGGGCATAAGTCTGGTCAAAGCTCCATCTGTGCTTCAAAAGGACCCTTCTCTCACTTTACCCAAGATCAAAGTTGGGGTTTCTCAACAACAATCAGAGGACAATCATCCCATGGAAGAGTGA

>Glyma12g09090.3   sequence type=CDS   gene model=Glyma12g09090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGATTGGAGAAGTGTTGGTTCTGTTCTTCTACCATATACCCTGGACATGGAATCCAGTTTGTTCGTAATGATGCAAAGATTTTTCGGTTTTGTAGATCTAAATGCCACAAAAACTTTAAAATGAAGAGGAACCCTCGGAAAGTAAAATGGACAAAGGCATATAGACGAGTGCATGGAAAGGATATGACACAGGACTCGACCTTTGAGTTTGAGAGAAAGCGAAACAGACCTGAGAGATATGACAGGAATCTTGCTGAGAATGTCCTCAAGGCCATTCCAAAGATTGATAAAATCAGAGTCACCAGGGAGGAGAAACACCATAAGAATAGGATGAAAGGCAAGAAGCAGAAGCTGCAAATGGAGGCAGCTAGGGAGTTGGAGCAGGGCATAAGTCTGGTCAAAGCTCCATCTGTGCTTCAAAAGGACCCTTCTCTCACTTTACCCAAGATCAAAGTTGGGGTTTCTCAACAACAATCAGAGGACAATCATCCCATGGAAGAGTGA

Predicted protein sequences of Glyma12g09090

Limit To All Plant Sequences

>Glyma12g09090.2   sequence type=predicted peptide   gene model=Glyma12g09090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRVHGKDMTQDSTFEFERKRNRPERYDRNLAENVLKAIPKIDKIRVTREEKHHKNRMKGKKQKLQMEAARELEQGISLVKAPSVLQKDPSLTLPKIKVGVSQQQSEDNHPMEE*

>Glyma12g09090.3   sequence type=predicted peptide   gene model=Glyma12g09090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRVHGKDMTQDSTFEFERKRNRPERYDRNLAENVLKAIPKIDKIRVTREEKHHKNRMKGKKQKLQMEAARELEQGISLVKAPSVLQKDPSLTLPKIKVGVSQQQSEDNHPMEE*

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