Glyma12g09060 - SoyBase

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Report for Sequence Feature Glyma12g09060

Feature Type:	gene_model
Chromosome:	Gm12
Start:	6863147
stop:	6871874
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g09060

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G27810	AT	Annotation by Michelle Graham. TAIR10: nucleobase-ascorbate transporter 12 \| chr2:11852338-11855988 FORWARD LENGTH=709	SoyBase	E_val: 0	ISS
GO:0006810	GO-bp	Annotation by Michelle Graham. GO Biological Process: transport	SoyBase	N/A	ISS
GO:0055085	GO-bp	Annotation by Michelle Graham. GO Biological Process: transmembrane transport	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0005215	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transporter activity	SoyBase	N/A	ISS
GO:0022857	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transmembrane transporter activity	SoyBase	N/A	ISS
KOG1292	KOG	Xanthine/uracil transporters	JGI		ISS
PTHR11119	Panther	PURINE PERMEASE	JGI		ISS
PTHR11119:SF8	Panther	SODIUM-DEPENDENT VITAMIN C TRANSPORTER	JGI		ISS
PF00860	PFAM	Permease family	JGI		ISS
UniRef100_G7JKZ3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Nucleobase ascorbate transporter n=1 Tax=Medicago truncatula RepID=G7JKZ3_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1LRC7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LRC7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma12g09060

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma12g09060 not represented in the dataset	Glyma12g09060 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g09060

Paralog	Evidence	Comments
Glyma11g19420	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g09060 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g085600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g09060

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma12g09060

Limit To All Plant Sequences

>Glyma12g09060.2   sequence type=transcript   gene model=Glyma12g09060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGGAAAAGAACAAAACGAACAAAAGAAAAGACTAGAAAAATATCTATTCTAATAAATAAATACCAACGGCTTTCTCTCTACACTTCTTACTTAGTTCACACTCTCCACTCTCTTTCCAATTCTGCTTCCAACACACTTCACTGCACATTCTCCATTTTCGTTCTCACTTAATTGGCGCGTTAAACCCTTCTTCATTGCTGCAACTCCACGCGCCAGATCTGCAAAACCATTAAGCTATGCTCCAGCACCACTACGCATAGCTTATTCCAAAAATGTCCAATTCCAATCCTAACAACCGTAACCGACACGCTCCGTCGCCGCCGGAGCCCAAGCCCATGCCGCCTTCTTCTTGGGCCAAGAAAACCGGCTTCAGGCCCAAACTCTCCGGCGAGACCAATGTCACCGATTCCGGCCCGATAACCACCCCGCCTCCCAACGTAGATCTCGAGGCCGGTCGTGTTCGGACTCCGGCCACCGCTAACGGCGTCACCAACGGCGACAAGGCTCCCGTTCCGGTTCCTCCGCCGCCTGCGGCGGCAAAGAAGCGGAGAGACTCCGACGGCGTGCCGAAGAGTTCTGTTCTCAGCACCAACGGACAGGCGCCGGCGGCGGAGCCGCCGCCGCGGAGGACGGCGAGGCACGAGGAAGTGGTAGACGGTTTGCCGGCGGATGACGACGAGTTTGTGTCGCGGCACTCGCATATGAAGTATGAACTCAGAGATTCACCTGGTTTAGTTCCTATTGGCGTGTACGGAATTCAGCACTACTTTTCCATATTAGGTTCGTTGGTTCTGATTCCGCTTGTGATTGTTCCTACAATGGGAGGCACTCATGAGGAAACTTCTATGGTGGTATCGACCGTGCTCTTTGTCTCGGGGGTGACAACTCTCTTGCATATTGCTTTTGGCTCCAGGTTGCCCTTGATTCAGGGCCCTTCTTTTGTTTATCTCGCACCGGCGCTCGCGATAATCAACTCCCCGGAGTTTCAAGGATTGAATGAAAATAAATTCAAGCATATAATGAGGGAGCTCCAGGGGGCTATAATTATTGGCGCAGCTTTCCAAACTTTACTTGGGTATACTGGACTTATGTCGCTGTTAGTAAGATTGATCAATCCTGTAGTTATATCCCCAACTATTGCTGCAGTTGGACTTTCATTCTACAGTTATGGTTTCCCATTAGTTGGTACATGTATTGAGATCGGTGCAGTACAAATATTAGTGGTTATTGTTTTTTCTCTTTATCTTCGTAAGATATCTGTTCTTGGACATCGCATATTTCTAATATATGCGGTTCCTCTGGGTCTGGCAATTACATGGGCATTTGCTTTCATGCTGACTGAAGCAGGAGTTTACAGCTACAAAGGGTGTGATGCAAATATACCTTCCTCAAATATGGTTTCAGAGCACTGCAGAAAGCATTTCTCAAGGATGAGGCACTGTCGGGTTGATACTTCTCAAGCATTGAAATCCTCTTCATGGTTTAGGTTTCCTTATCCACTACAATGGGGTACTCCTGTCTTCCACTGGAAAATGGCTATTGTGATGTGTGTGGTTTCCTTAATCTCATCTGTGGATTCGGTTGGCTCATACCATGCATCTTCATTACTGGTAGCATCCAGACCGCCAACTCCCGGAGTTCTTAGTCGAGGAATTGGTTTGGAAGGTCTTGCTAGTGTCTTGGCTGGTCTCTGGGGAACTGGAACTGGATCTACAACTTTAACTGAAAATGTTCACACAATTGCTGTGACTAAAATGGGAAGCCGCAGGGCAGTTCAACTGGGTGCATGCTTTCTGATAGTGTTGTCTCTTATAGGTAAGGTTGGAGGATTCATTGCTTCAATTCCCGAAGTCATGGTTGCTGGTCTCCTCTGCTTTATGTGGGCAATGCTCACAGCATTAGGCTTGTCAAATCTACGCTATAGTGAGGCTGGAAGCTCTCGAAATATCATCATAGTTGGGTTATCATTGTTTTTCTCTCTTTCCATACCTGCCTACTTTCAACAATATGGCATCTCTCCAAATTCCAACTTGTCTGTGCCAAGTTATTTTCAGCCCTACATTGTGACTTCTCACGGGCCTTTCCACAGCAAATATGGAGGGTTGAACTATGTCTTGAACACACTTTTTTCACTACACATGGTGATAGCGTTTCTTGTCGCTTTTATCCTGGATAATACTGTACCCGGCAGTAAGCAGGAACGTGGGGTATATGTTTGGTCCGAAGCAGAGATTGCTAGAAGAGAGCCTGCTGTTGCTAATGACTATGAATTACCCTTGAAAGTTGGTCGGATTTTCAGATGGGTGAAGTGGGTTGGCGTGTAAAACTAGGGTTTCTTTGGTTGACATATTCACTTTATTAAATGCTCTCAACTGTTGAAGGGGCATCGAGTCTAGATTCAAATGTCTTATGTTGATTCAATGATGGAGAGTAATAGGTGATGTTACAGAGTTAATTTGTATACATTGGGGATTTGTAGGGGTCTATTTGTGTTGTAATTTATTAGATTAATCTTGTGGCTAGTTTTGATTCATTCGAAATTTCCAGGTGTATTTTTTATTTTTTTTTTGCTTGCTTAAAGGTGAGAAGTTTGACAAATCATTTTGAATGTATATATACTTTTCTTTTTTTGCAGTTTAATCGAGCTTCATTGCAATTCCTAGTTGTAGCAAGCTATATATAATATGTATGCATCATACTTGGTCTGTTAACTCCAGCAGAAAGTAAAGACGCCCCTGATTTGACAGCCAATGCAGCGATTGGTGGTTGAGGCGATGGCAACCGAAACACTAAATCGGAGCTGGTTCTCCCTTAGGGCTCCAAAATTGGTCCCCGATCGCCAAAGCAGCGACTGGTTTGGAGAAGGCGTAACACACTCTCCAACTTGTCGGAATCAACTTTGTACATGTCTCCTCCTTCTTCTGCAAATGTGTCTCCTTCCTCTGCGTATGTGTTTCCTTCTTCTGCAAGCTGTCTGTCATTGTCATTCACTGAAGAATCCGGTGAGAGCTCATTGTCAAGGTTGGAGGTGGAATGTGACCAAAAATCGAGGCTTGTTGAAATTTTGGGGGAAAGTTGATTTGGAAATTTTGAGAAAGATAGGGTCACCGATGCGTTGATGAATCGGTGAATAGTTGTTGGCAACGGCAAGCAACAATGGCAAGCGGCAATGCTAGCAATGATGGCAGCGAGCTGGTGG

Coding sequences of Glyma12g09060

Limit To All Plant Sequences

>Glyma12g09060.1   sequence type=CDS   gene model=Glyma12g09060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCCAATTCCAATCCTAACAACCGTAACCGACACGCTCCGTCGCCGCCGGAGCCCAAGCCCATGCCGCCTTCTTCTTGGGCCAAGAAAACCGGCTTCAGGCCCAAACTCTCCGGCGAGACCAATGTCACCGATTCCGGCCCGATAACCACCCCGCCTCCCAACGTAGATCTCGAGGCCGGTCGTGTTCGGACTCCGGCCACCGCTAACGGCGTCACCAACGGCGACAAGGCTCCCGTTCCGGTTCCTCCGCCGCCTGCGGCGGCAAAGAAGCGGAGAGACTCCGACGGCGTGCCGAAGAGTTCTGTTCTCAGCACCAACGGACAGGCGCCGGCGGCGGAGCCGCCGCCGCGGAGGACGGCGAGGCACGAGGAAGTGGTAGACGGTTTGCCGGCGGATGACGACGAGTTTGTGTCGCGGCACTCGCATATGAAGTATGAACTCAGAGATTCACCTGGTTTAGTTCCTATTGGCGTGTACGGAATTCAGCACTACTTTTCCATATTAGGTTCGTTGGTTCTGATTCCGCTTGTGATTGTTCCTACAATGGGAGGCACTCATGAGGAAACTTCTATGGTGGTATCGACCGTGCTCTTTGTCTCGGGGGTGACAACTCTCTTGCATATTGCTTTTGGCTCCAGGTTGCCCTTGATTCAGGGCCCTTCTTTTGTTTATCTCGCACCGGCGCTCGCGATAATCAACTCCCCGGAGTTTCAAGGATTGAATGAAAATAAATTCAAGCATATAATGAGGGAGCTCCAGGGGGCTATAATTATTGGCGCAGCTTTCCAAACTTTACTTGGGTATACTGGACTTATGTCGCTGTTAGTAAGATTGATCAATCCTGTAGTTATATCCCCAACTATTGCTGCAGTTGGACTTTCATTCTACAGTTATGGTTTCCCATTAGTTGGTACATGTATTGAGATCGGTGCAGTACAAATATTAGTGGTTATTGTTTTTTCTCTTTATCTTCGTAAGATATCTGTTCTTGGACATCGCATATTTCTAATATATGCGGTTCCTCTGGGTCTGGCAATTACATGGGCATTTGCTTTCATGCTGACTGAAGCAGGAGTTTACAGCTACAAAGGGTGTGATGCAAATATACCTTCCTCAAATATGGTTTCAGAGCACTGCAGAAAGCATTTCTCAAGGATGAGGCACTGTCGGGTTGATACTTCTCAAGCATTGAAATCCTCTTCATGGTTTAGGTTTCCTTATCCACTACAATGGGGTACTCCTGTCTTCCACTGGAAAATGGCTATTGTGATGTGTGTGGTTTCCTTAATCTCATCTGTGGATTCGGTTGGCTCATACCATGCATCTTCATTACTGGTAGCATCCAGACCGCCAACTCCCGGAGTTCTTAGTCGAGGAATTGGTTTGGAAGGTCTTGCTAGTGTCTTGGCTGGTCTCTGGGGAACTGGAACTGGATCTACAACTTTAACTGAAAATGTTCACACAATTGCTGTGACTAAAATGGGAAGCCGCAGGGCAGTTCAACTGGGTGCATGCTTTCTGATAGTGTTGTCTCTTATAGGTAAGGTTGGAGGATTCATTGCTTCAATTCCCGAAGTCATGGTTGCTGGTCTCCTCTGCTTTATGTGGGCAATGCTCACAGCATTAGGCTTGTCAAATCTACGCTATAGTGAGGCTGGAAGCTCTCGAAATATCATCATAGTTGGGTTATCATTGTTTTTCTCTCTTTCCATACCTGCCTACTTTCAACAATATGGCATCTCTCCAAATTCCAACTTGTCTGTGCCAAGTTATTTTCAGCCCTACATTGTGACTTCTCACGGGCCTTTCCACAGCAAATATGGAGGGTTGAACTATGTCTTGAACACACTTTTTTCACTACACATGGTGATAGCGTTTCTTGTCGCTTTTATCCTGGATAATACTGTACCCGGCAGTAAGCAGGAACGTGGGGTATATGTTTGGTCCGAAGCAGAGATTGCTAGAAGAGAGCCTGCTGTTGCTAATGACTATGAATTACCCTTGAAAGTTGGTCGGATTTTCAGATGGGTGAAGTGGGTTGGCGTGTAA

>Glyma12g09060.2   sequence type=CDS   gene model=Glyma12g09060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCCAATTCCAATCCTAACAACCGTAACCGACACGCTCCGTCGCCGCCGGAGCCCAAGCCCATGCCGCCTTCTTCTTGGGCCAAGAAAACCGGCTTCAGGCCCAAACTCTCCGGCGAGACCAATGTCACCGATTCCGGCCCGATAACCACCCCGCCTCCCAACGTAGATCTCGAGGCCGGTCGTGTTCGGACTCCGGCCACCGCTAACGGCGTCACCAACGGCGACAAGGCTCCCGTTCCGGTTCCTCCGCCGCCTGCGGCGGCAAAGAAGCGGAGAGACTCCGACGGCGTGCCGAAGAGTTCTGTTCTCAGCACCAACGGACAGGCGCCGGCGGCGGAGCCGCCGCCGCGGAGGACGGCGAGGCACGAGGAAGTGGTAGACGGTTTGCCGGCGGATGACGACGAGTTTGTGTCGCGGCACTCGCATATGAAGTATGAACTCAGAGATTCACCTGGTTTAGTTCCTATTGGCGTGTACGGAATTCAGCACTACTTTTCCATATTAGGTTCGTTGGTTCTGATTCCGCTTGTGATTGTTCCTACAATGGGAGGCACTCATGAGGAAACTTCTATGGTGGTATCGACCGTGCTCTTTGTCTCGGGGGTGACAACTCTCTTGCATATTGCTTTTGGCTCCAGGTTGCCCTTGATTCAGGGCCCTTCTTTTGTTTATCTCGCACCGGCGCTCGCGATAATCAACTCCCCGGAGTTTCAAGGATTGAATGAAAATAAATTCAAGCATATAATGAGGGAGCTCCAGGGGGCTATAATTATTGGCGCAGCTTTCCAAACTTTACTTGGGTATACTGGACTTATGTCGCTGTTAGTAAGATTGATCAATCCTGTAGTTATATCCCCAACTATTGCTGCAGTTGGACTTTCATTCTACAGTTATGGTTTCCCATTAGTTGGTACATGTATTGAGATCGGTGCAGTACAAATATTAGTGGTTATTGTTTTTTCTCTTTATCTTCGTAAGATATCTGTTCTTGGACATCGCATATTTCTAATATATGCGGTTCCTCTGGGTCTGGCAATTACATGGGCATTTGCTTTCATGCTGACTGAAGCAGGAGTTTACAGCTACAAAGGGTGTGATGCAAATATACCTTCCTCAAATATGGTTTCAGAGCACTGCAGAAAGCATTTCTCAAGGATGAGGCACTGTCGGGTTGATACTTCTCAAGCATTGAAATCCTCTTCATGGTTTAGGTTTCCTTATCCACTACAATGGGGTACTCCTGTCTTCCACTGGAAAATGGCTATTGTGATGTGTGTGGTTTCCTTAATCTCATCTGTGGATTCGGTTGGCTCATACCATGCATCTTCATTACTGGTAGCATCCAGACCGCCAACTCCCGGAGTTCTTAGTCGAGGAATTGGTTTGGAAGGTCTTGCTAGTGTCTTGGCTGGTCTCTGGGGAACTGGAACTGGATCTACAACTTTAACTGAAAATGTTCACACAATTGCTGTGACTAAAATGGGAAGCCGCAGGGCAGTTCAACTGGGTGCATGCTTTCTGATAGTGTTGTCTCTTATAGGTAAGGTTGGAGGATTCATTGCTTCAATTCCCGAAGTCATGGTTGCTGGTCTCCTCTGCTTTATGTGGGCAATGCTCACAGCATTAGGCTTGTCAAATCTACGCTATAGTGAGGCTGGAAGCTCTCGAAATATCATCATAGTTGGGTTATCATTGTTTTTCTCTCTTTCCATACCTGCCTACTTTCAACAATATGGCATCTCTCCAAATTCCAACTTGTCTGTGCCAAGTTATTTTCAGCCCTACATTGTGACTTCTCACGGGCCTTTCCACAGCAAATATGGAGGGTTGAACTATGTCTTGAACACACTTTTTTCACTACACATGGTGATAGCGTTTCTTGTCGCTTTTATCCTGGATAATACTGTACCCGGCAGTAAGCAGGAACGTGGGGTATATGTTTGGTCCGAAGCAGAGATTGCTAGAAGAGAGCCTGCTGTTGCTAATGACTATGAATTACCCTTGAAAGTTGGTCGGATTTTCAGATGGGTGAAGTGGGTTGGCGTGTAA

Predicted protein sequences of Glyma12g09060

Limit To All Plant Sequences

>Glyma12g09060.1   sequence type=predicted peptide   gene model=Glyma12g09060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSNSNPNNRNRHAPSPPEPKPMPPSSWAKKTGFRPKLSGETNVTDSGPITTPPPNVDLEAGRVRTPATANGVTNGDKAPVPVPPPPAAAKKRRDSDGVPKSSVLSTNGQAPAAEPPPRRTARHEEVVDGLPADDDEFVSRHSHMKYELRDSPGLVPIGVYGIQHYFSILGSLVLIPLVIVPTMGGTHEETSMVVSTVLFVSGVTTLLHIAFGSRLPLIQGPSFVYLAPALAIINSPEFQGLNENKFKHIMRELQGAIIIGAAFQTLLGYTGLMSLLVRLINPVVISPTIAAVGLSFYSYGFPLVGTCIEIGAVQILVVIVFSLYLRKISVLGHRIFLIYAVPLGLAITWAFAFMLTEAGVYSYKGCDANIPSSNMVSEHCRKHFSRMRHCRVDTSQALKSSSWFRFPYPLQWGTPVFHWKMAIVMCVVSLISSVDSVGSYHASSLLVASRPPTPGVLSRGIGLEGLASVLAGLWGTGTGSTTLTENVHTIAVTKMGSRRAVQLGACFLIVLSLIGKVGGFIASIPEVMVAGLLCFMWAMLTALGLSNLRYSEAGSSRNIIIVGLSLFFSLSIPAYFQQYGISPNSNLSVPSYFQPYIVTSHGPFHSKYGGLNYVLNTLFSLHMVIAFLVAFILDNTVPGSKQERGVYVWSEAEIARREPAVANDYELPLKVGRIFRWVKWVGV*

>Glyma12g09060.2   sequence type=predicted peptide   gene model=Glyma12g09060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSNSNPNNRNRHAPSPPEPKPMPPSSWAKKTGFRPKLSGETNVTDSGPITTPPPNVDLEAGRVRTPATANGVTNGDKAPVPVPPPPAAAKKRRDSDGVPKSSVLSTNGQAPAAEPPPRRTARHEEVVDGLPADDDEFVSRHSHMKYELRDSPGLVPIGVYGIQHYFSILGSLVLIPLVIVPTMGGTHEETSMVVSTVLFVSGVTTLLHIAFGSRLPLIQGPSFVYLAPALAIINSPEFQGLNENKFKHIMRELQGAIIIGAAFQTLLGYTGLMSLLVRLINPVVISPTIAAVGLSFYSYGFPLVGTCIEIGAVQILVVIVFSLYLRKISVLGHRIFLIYAVPLGLAITWAFAFMLTEAGVYSYKGCDANIPSSNMVSEHCRKHFSRMRHCRVDTSQALKSSSWFRFPYPLQWGTPVFHWKMAIVMCVVSLISSVDSVGSYHASSLLVASRPPTPGVLSRGIGLEGLASVLAGLWGTGTGSTTLTENVHTIAVTKMGSRRAVQLGACFLIVLSLIGKVGGFIASIPEVMVAGLLCFMWAMLTALGLSNLRYSEAGSSRNIIIVGLSLFFSLSIPAYFQQYGISPNSNLSVPSYFQPYIVTSHGPFHSKYGGLNYVLNTLFSLHMVIAFLVAFILDNTVPGSKQERGVYVWSEAEIARREPAVANDYELPLKVGRIFRWVKWVGV*

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