Glyma12g09000 - SoyBase

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Report for Sequence Feature Glyma12g09000

Feature Type:	gene_model
Chromosome:	Gm12
Start:	6800870
stop:	6804723
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g09000

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G03740	AT	Annotation by Michelle Graham. TAIR10: histone deacetylase 2C \| chr5:981994-983961 FORWARD LENGTH=294	SoyBase	E_val: 2.00E-49	ISS
GO:0000085	GO-bp	Annotation by Michelle Graham. GO Biological Process: G2 phase of mitotic cell cycle	SoyBase	N/A	ISS
GO:0001510	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA methylation	SoyBase	N/A	ISS
GO:0009414	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to water deprivation	SoyBase	N/A	ISS
GO:0009640	GO-bp	Annotation by Michelle Graham. GO Biological Process: photomorphogenesis	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0009737	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus	SoyBase	N/A	ISS
GO:0045892	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005730	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleolus	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0004407	GO-mf	Annotation by Michelle Graham. GO Molecular Function: histone deacetylase activity	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
UniRef100_Q8LJS2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Histone deacetylase HDT1 n=2 Tax=Glycine max RepID=HDT1_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q8LJS2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Histone deacetylase HDT1 n=2 Tax=Glycine max RepID=HDT1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma12g09000

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g09000

Paralog	Evidence	Comments
Glyma11g19480	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g09000 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g084700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g09000

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma12g09000

Limit To All Plant Sequences

>Glyma12g09000.1   sequence type=CDS   gene model=Glyma12g09000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGCACCAATGGAGTTTTGGGGTGTTGAGGTTAAGGTTGGGCAGACTGTGACGGTTGACCCAATGGATCCTGTGGATTCATACATACACATTTCTCAGGTTGCGCTCGGAGAGGCGAAAAAGGACAAACCTAATGAACCTGTGGTTCTGTACTTGAAAGTTGGTGAACAGAAGATTGTTTTGGGAACCCTTTCTAGGGATGGCATCCCTCACCTATCATTGGATTTGGTTCTGGACTCCGATTCTGAGCTTTCCCACACTTCAAAAAGTGCCAGTGTCTTTTTCTGTGGATACAAAGTTCTAACTGGCAATGACAATGCTTCTGACTTTTCTGATAGTAGTGAAGAGGACGAGGAACTTGCATTGGAGGGACAAGATAATGGAAAACCTGAATTAAAAGCTGAAGGTGCGAAGGTTACCAAACCTTCTAAATCTATTCCCAAGATTGGTGCACCAGCAAAAGCTGCTGATCCTAAGAAAGACGAGGATGATGATTCCGATGATGAATCGGATGATGATCTTGCTGGTGAAGATGAATCTGGAAGTTCCGATGAGATGGATGATGATAGCAATAGTGAAGAGGAGAGTGATGGAGATGATGAAGAGACCCCTGCTAAGAAGGTGGATCAGGGCAAGAAGAGACCCAATGAATCTGCAGCAAAAACTCCTATTTCTGCCAAGAAAGCTAAAACTGCTACTCCTGAAAAGACTGATGGTAAGAAAAGTGTACATGTAGCTACTCCTCATCCTTCGAAAAAGGGTGGGAAAACTCCCAACAGTACAAAAGGCCAGACTCCCAATTCTGCTGGACAACTATCTTGTGCAAGTTGTAAAAAGTCTTTCACCAACGAAGCTGGTCTGCAACAACATAAGAAGGCTAAGCATGGTGGTCAGTGA

Predicted protein sequences of Glyma12g09000

Limit To All Plant Sequences

>Glyma12g09000.1   sequence type=predicted peptide   gene model=Glyma12g09000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDAPMEFWGVEVKVGQTVTVDPMDPVDSYIHISQVALGEAKKDKPNEPVVLYLKVGEQKIVLGTLSRDGIPHLSLDLVLDSDSELSHTSKSASVFFCGYKVLTGNDNASDFSDSSEEDEELALEGQDNGKPELKAEGAKVTKPSKSIPKIGAPAKAADPKKDEDDDSDDESDDDLAGEDESGSSDEMDDDSNSEEESDGDDEETPAKKVDQGKKRPNESAAKTPISAKKAKTATPEKTDGKKSVHVATPHPSKKGGKTPNSTKGQTPNSAGQLSCASCKKSFTNEAGLQQHKKAKHGGQ*

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