Glyma12g08990 - SoyBase

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Report for Sequence Feature Glyma12g08990

Feature Type:	gene_model
Chromosome:	Gm12
Start:	6788904
stop:	6795090
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g08990

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G22740	AT	Annotation by Michelle Graham. TAIR10: cellulose synthase-like A02 \| chr5:7555379-7559866 REVERSE LENGTH=534	SoyBase	E_val: 0	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0016757	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups	SoyBase	N/A	ISS
GO:0051753	GO-mf	Annotation by Michelle Graham. GO Molecular Function: mannan synthase activity	SoyBase	N/A	ISS
PTHR10587	Panther	N-ACETYLGLUCOSAMINYLTRANSFERASE-RELATED	JGI		ISS
PTHR10587:SF34	Panther	MANNAN SYNTHASE	JGI		ISS
PF00535	PFAM	Glycosyl transferase family 2	JGI		ISS
UniRef100_G7JM38	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Glucomannan 4-beta-mannosyltransferase n=1 Tax=Medicago truncatula RepID=G7JM38_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1LRC1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LRC1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma12g08990

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g08990

Paralog	Evidence	Comments
Glyma11g19490	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g08990 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g084600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g08990

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma12g08990

Limit To All Plant Sequences

>Glyma12g08990.1   sequence type=CDS   gene model=Glyma12g08990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTGAATCTCAGCCCAAGTTCTTCATCCCCGACTCGATCAATGGAGTGAATTTCGACGTGGCGGCGCAGATTAAGATGGTGTGGGAAGTGATCAAGGCGCCATTGATCGTGCCACTGCTGAACCTCGCAGTGTACATTTCCCTAGCGATGGCACTCATGCTCTTCATGGAGAGGGTGTACATGGGCATTGTCATCATCCTCGTTAAGCTCTTCTGGAAGAAGCCCCACCAGCGCTACAAGTTCGAGCCACTCCAAGACGACGAGGAACTCGGGAACTCTAATTACCCCGTCGTGCTTGTGCAGATTCCAATGTTCAATGAAAAAGAGGTGTACAAGGTGTCGATTGGAGCAGCTTGCAATCTTTCATGGCCTGTGGATCGTCTCGTGATCCAAGTGCTCGATGATTCTACTGACCCTACCATCAAGCAAATGGTGGAGATGGAATGCAATAGATGGGCAAGTAAGGGCATAAACATAGTGTACCAAATCAGAGAAACAAGAGGAGGGTACAAAGCGGGTGCTCTAAAAGAAGGCCTAAAACGTAACTATGTGAAACACTGCGAGTACGTGGCAATTTTCGATGCAGATTTCAGGCCAGAGCCAGATTTTCTCAGACGTTCCATTCCTTTCTTGGTGGGCAACCCCGACATTGCTCTTGTTCAAGCTCGTTGGAGATTTGTGAATTCTGATGAGTGTTTATTGACAAGAATGCAAGAGATGTCCCTGGATTACCATTTCACAGTAGAGCAAGAAGTTGGATCAGCCACTCACGCTTTCTTCGGTTTCAACGGAACTGCTGGCATTTGGAGAATAGCTGCTATCAATGAAGCTGGAGGGTGGAAAGACAGAACAACAGTGGAAGATATGGACCTTGCTGTTCGTGCTAGTCTTAGGGGATGGAAATTTTTGTACCTTGGAGACCTCCAGGCCAAAAGTGAGCTTCCTAGTACTTTGAGAGCCTTCAGATTCCAGCAGCACAGATGGTCTTGTGGTCCTGCTAATTTGTTCCGCAAAATGGTGATGGAGATTGTGAGGAACAAGAAAGTTAAGTTTTGGAAGAAAGTGTATGTTATATACAGCTTTTTCTTTGTTCGCAAAATCATCGCCCACATGGTCACCTTCTTCTTCTACTGTGTTGTGATTCCCCTTACAATCCTGGTCCCTGAGGTTCATGTTCCAATCTGGGGAGCTGTTTATATTCCTTCTGTCATCACCATTCTCAATTCAGTTGGAACACCAAGGTCCATTCACCTTCTGTTCTATTGGATCCTCTTTGAGAATGTGATGTCTTTGCACCGTACCAAGGCAACATTTATAGGTCTCTTAGAGTATGGGAGGGCTAATGAATGGGTTGTGACTGAAAAACTTGGTGACTCTGTCAACAATAATAATAAGAATAAATCAGGAGATGCTGCCAAGAAGAATAATGCCATCAAGGCCACCCCCAAAAAGACTCGATCCAAATTTGTTGAAAGACTTAATTTACTGGAGCTGGGATTTGCTGTCTTCCTCTTCGTATGTGGATGCTATGATTATGTTCATGGGAAACACAACTACTTCATCTATCTCTTCCTTCAGACCTTAACATTCTCAATTGTAGGATTTGGCTACGTTGGCACCATCGTGTAA

Predicted protein sequences of Glyma12g08990

Limit To All Plant Sequences

>Glyma12g08990.1   sequence type=predicted peptide   gene model=Glyma12g08990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVESQPKFFIPDSINGVNFDVAAQIKMVWEVIKAPLIVPLLNLAVYISLAMALMLFMERVYMGIVIILVKLFWKKPHQRYKFEPLQDDEELGNSNYPVVLVQIPMFNEKEVYKVSIGAACNLSWPVDRLVIQVLDDSTDPTIKQMVEMECNRWASKGINIVYQIRETRGGYKAGALKEGLKRNYVKHCEYVAIFDADFRPEPDFLRRSIPFLVGNPDIALVQARWRFVNSDECLLTRMQEMSLDYHFTVEQEVGSATHAFFGFNGTAGIWRIAAINEAGGWKDRTTVEDMDLAVRASLRGWKFLYLGDLQAKSELPSTLRAFRFQQHRWSCGPANLFRKMVMEIVRNKKVKFWKKVYVIYSFFFVRKIIAHMVTFFFYCVVIPLTILVPEVHVPIWGAVYIPSVITILNSVGTPRSIHLLFYWILFENVMSLHRTKATFIGLLEYGRANEWVVTEKLGDSVNNNNKNKSGDAAKKNNAIKATPKKTRSKFVERLNLLELGFAVFLFVCGCYDYVHGKHNYFIYLFLQTLTFSIVGFGYVGTIV*

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