Glyma12g08980 - SoyBase

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Report for Sequence Feature Glyma12g08980

Feature Type:	gene_model
Chromosome:	Gm12
Start:	6750912
stop:	6755225
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g08980

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G08230	AT	Annotation by Michelle Graham. TAIR10: Transmembrane amino acid transporter family protein \| chr1:2583715-2586700 REVERSE LENGTH=451	SoyBase	E_val: 0	ISS
GO:0015812	GO-bp	Annotation by Michelle Graham. GO Biological Process: gamma-aminobutyric acid transport	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0015185	GO-mf	Annotation by Michelle Graham. GO Molecular Function: gamma-aminobutyric acid transmembrane transporter activity	SoyBase	N/A	ISS
KOG1303	KOG	Amino acid transporters	JGI		ISS
PTHR22950	Panther	AMINO ACID TRANSPORTER	JGI		ISS
PF01490	PFAM	Transmembrane amino acid transporter protein	JGI		ISS
UniRef100_G7JM48	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Lysine histidine transporter n=1 Tax=Medicago truncatula RepID=G7JM48_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233D8A2	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233D8A2 related cluster n=1 Tax=unknown RepID=UPI000233D8A2	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma12g08980

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g08980

Paralog	Evidence	Comments
Glyma11g19501	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g08980 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g084500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g08980

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma12g08980

Limit To All Plant Sequences

>Glyma12g08980.2   sequence type=transcript   gene model=Glyma12g08980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACTTATTTAATAAAACGTACCAAATTGAAAATAATAAGACATACATATTTTAAGTGAACTTTATTGAATAGAAGAGAATATATGAGAAAAGCCTTCTCTTACTAGCAGGGCCTTGCCTGTATATATTCCTCCTAATTATGCTAATATGAAATTTGGACAGTGAGGCCATTTTGGTCATGGTGTGATCATTTTCTCTGCTCTTATTCTTAATGAGGCTTATATCCAAGTTTGGCCGGTTGCATATTGCACAAGGCGTCTATAAAAGTAACATCACTGAAATCATTGTCAAATTGACACTGCTTTTCTCTAAAAGGACTTCAAAGTTCTGTTAGATATACAGTGTTATTCTGCTTTCGATCGCTCTATTATTCATTTGCTAAGACCTTAGAGAAGACAGAGGATGGGTACCCTGCTTCCAGATGAAAAATCAGAGAATCCAAATGCTTTGGAACAACTTCAACACCAAAAAGATGTGGATGCAGGCGCTCTCTTTGTCCTCAAATCCAAAGGTTCTTGGATGCATTGTGGGTACCACTTGACAACTTCGATCGTGGCACCACCTCTTCTAAGTCTTCCTTATGCATTCACCTTCCTTGGATGGACGGCTGGGATCTTAAGCTTAGTGATTGGAGCTTTGGTCACTTTCTATTCATACAATTTAATATCTAGGGTTCTTGAACACCACGCTCAGATGGGTATGCGTCAGCTACGCTTTAGAGACATGGCTCGCGATATTTTAGGTCCAGGGTGGGGTCGTTATTTTGTCGGCCCAATTCAATTCGCAGTCTGTTATGGTGCTGTAGTAGCTTGTACTCTCTTGGGAGGACAATGCATGAAGGCAATTTACTTGCTGTCAAATCCAAACGGGACCATGAAGCTTTACGAGTTTGTAATTATATTTGGATGCTTCATGCTGATTTTGGCTCAAATCCCATCTTTCCACTCTTTGAGGCACATTAATCTAGTGTCCTTGGTTCTGTGCTTAGCCTATAGTGCCGGTGCTACTATTGGTTCCATTTACATTGGAGACTCATCAAAAGGACCAGAAAAGGATTATTCTTTGAAAGGTGATTCAGTGAATCGCTTATTTGGAATCTTCAATGCAATTGCTATCATTGCCACGACTTATGGAAATGGAATCATTCCAGAAATTCAGGCAACATTAGCACCACCCGTAAAAGGGAAGATGCTCAAGGGACTATGTGTTTGTTATCTTGTTCTTATAGTTACCTTCTTTAGTGTATCTGTATCCGGTTATTGGGCATTTGGTAATGAATCAGAAGGCCTCATCTTAAGCAACTTCGTGGACAATGGGAAGCCTCTGGTGCCCAAGTGGTTCATTTACATGACCAACATTTTCACTATAACACAATTATCTGCGGTTGGTGTGGTTTATTTGCAACCAACAAATGAAGTGCTAGAGCAAACATTTGGAGACCCAAAAAGCCCCGAGTTCTCCAAACGCAATGTAATCCCTAGAGTGATATCTCGGTCATTAGCTATTGCTATTTCAACCACTATAGCAGCCATGCTTCCATTTTTTGGAGACATAAACTCTCTTATAGGAGCTTTTGGCTTTATCCCACTTGACTTCATCTTGCCAATGGTTTTCTACAATTTGACATTTAAGCCATCTAAGCGAAGCCCTGTTTTCTGGTTGAATGTGATAATTGTTGTGGCTTTCTCCGCATTGGGAGCTATAGCAGCAGTTGCAGCAGTTAGGCAGATAGTTCTTGATGCTAAAAATTACCAATTATTTGCTAATGTATGATCATGTTGGACCATCCAATGAAGTTTTGTTGTTCTATGTATCATGGTTCATACTCTAGTAGTTTAAAACCAATCATTGAGTTATTTCAATTAATATAATTATATAAAGACTATTGCAGAACGAAATTATGAACTAAGGAGACTGAGACTGAGTAACTATTATAAGATGAAGCATTGTGGACACTAATTTCAAC

Coding sequences of Glyma12g08980

Limit To All Plant Sequences

>Glyma12g08980.1   sequence type=CDS   gene model=Glyma12g08980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTACCCTGCTTCCAGATGAAAAATCAGAGAATCCAAATGCTTTGGAACAACTTCAACACCAAAAAGATGTGGATGCAGGCGCTCTCTTTGTCCTCAAATCCAAAGGTTCTTGGATGCATTGTGGGTACCACTTGACAACTTCGATCGTGGCACCACCTCTTCTAAGTCTTCCTTATGCATTCACCTTCCTTGGATGGACGGCTGGGATCTTAAGCTTAGTGATTGGAGCTTTGGTCACTTTCTATTCATACAATTTAATATCTAGGGTTCTTGAACACCACGCTCAGATGGGTATGCGTCAGCTACGCTTTAGAGACATGGCTCGCGATATTTTAGGTCCAGGGTGGGGTCGTTATTTTGTCGGCCCAATTCAATTCGCAGTCTGTTATGGTGCTGTAGTAGCTTGTACTCTCTTGGGAGGACAATGCATGAAGGCAATTTACTTGCTGTCAAATCCAAACGGGACCATGAAGCTTTACGAGTTTGTAATTATATTTGGATGCTTCATGCTGATTTTGGCTCAAATCCCATCTTTCCACTCTTTGAGGCACATTAATCTAGTGTCCTTGGTTCTGTGCTTAGCCTATAGTGCCGGTGCTACTATTGGTTCCATTTACATTGGAGACTCATCAAAAGGACCAGAAAAGGATTATTCTTTGAAAGGTGATTCAGTGAATCGCTTATTTGGAATCTTCAATGCAATTGCTATCATTGCCACGACTTATGGAAATGGAATCATTCCAGAAATTCAGGTTTATTTGCAACCAACAAATGAAGTGCTAGAGCAAACATTTGGAGACCCAAAAAGCCCCGAGTTCTCCAAACGCAATGTAATCCCTAGAGTGATATCTCGGTCATTAGCTATTGCTATTTCAACCACTATAGCAGCCATGCTTCCATTTTTTGGAGACATAAACTCTCTTATAGGAGCTTTTGGCTTTATCCCACTTGACTTCATCTTGCCAATGGTTTTCTACAATTTGACATTTAAGCCATCTAAGCGAAGCCCTGTTTTCTGGTTGAATGTGATAATTGTTGTGGCTTTCTCCGCATTGGGAGCTATAGCAGCAGTTGCAGCAGTTAGGCAGATAGTTCTTGATGCTAAAAATTACCAATTATTTGCTAATGTATGA

>Glyma12g08980.2   sequence type=CDS   gene model=Glyma12g08980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTACCCTGCTTCCAGATGAAAAATCAGAGAATCCAAATGCTTTGGAACAACTTCAACACCAAAAAGATGTGGATGCAGGCGCTCTCTTTGTCCTCAAATCCAAAGGTTCTTGGATGCATTGTGGGTACCACTTGACAACTTCGATCGTGGCACCACCTCTTCTAAGTCTTCCTTATGCATTCACCTTCCTTGGATGGACGGCTGGGATCTTAAGCTTAGTGATTGGAGCTTTGGTCACTTTCTATTCATACAATTTAATATCTAGGGTTCTTGAACACCACGCTCAGATGGGTATGCGTCAGCTACGCTTTAGAGACATGGCTCGCGATATTTTAGGTCCAGGGTGGGGTCGTTATTTTGTCGGCCCAATTCAATTCGCAGTCTGTTATGGTGCTGTAGTAGCTTGTACTCTCTTGGGAGGACAATGCATGAAGGCAATTTACTTGCTGTCAAATCCAAACGGGACCATGAAGCTTTACGAGTTTGTAATTATATTTGGATGCTTCATGCTGATTTTGGCTCAAATCCCATCTTTCCACTCTTTGAGGCACATTAATCTAGTGTCCTTGGTTCTGTGCTTAGCCTATAGTGCCGGTGCTACTATTGGTTCCATTTACATTGGAGACTCATCAAAAGGACCAGAAAAGGATTATTCTTTGAAAGGTGATTCAGTGAATCGCTTATTTGGAATCTTCAATGCAATTGCTATCATTGCCACGACTTATGGAAATGGAATCATTCCAGAAATTCAGGCAACATTAGCACCACCCGTAAAAGGGAAGATGCTCAAGGGACTATGTGTTTGTTATCTTGTTCTTATAGTTACCTTCTTTAGTGTATCTGTATCCGGTTATTGGGCATTTGGTAATGAATCAGAAGGCCTCATCTTAAGCAACTTCGTGGACAATGGGAAGCCTCTGGTGCCCAAGTGGTTCATTTACATGACCAACATTTTCACTATAACACAATTATCTGCGGTTGGTGTGGTTTATTTGCAACCAACAAATGAAGTGCTAGAGCAAACATTTGGAGACCCAAAAAGCCCCGAGTTCTCCAAACGCAATGTAATCCCTAGAGTGATATCTCGGTCATTAGCTATTGCTATTTCAACCACTATAGCAGCCATGCTTCCATTTTTTGGAGACATAAACTCTCTTATAGGAGCTTTTGGCTTTATCCCACTTGACTTCATCTTGCCAATGGTTTTCTACAATTTGACATTTAAGCCATCTAAGCGAAGCCCTGTTTTCTGGTTGAATGTGATAATTGTTGTGGCTTTCTCCGCATTGGGAGCTATAGCAGCAGTTGCAGCAGTTAGGCAGATAGTTCTTGATGCTAAAAATTACCAATTATTTGCTAATGTATGA

Predicted protein sequences of Glyma12g08980

Limit To All Plant Sequences

>Glyma12g08980.1   sequence type=predicted peptide   gene model=Glyma12g08980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGTLLPDEKSENPNALEQLQHQKDVDAGALFVLKSKGSWMHCGYHLTTSIVAPPLLSLPYAFTFLGWTAGILSLVIGALVTFYSYNLISRVLEHHAQMGMRQLRFRDMARDILGPGWGRYFVGPIQFAVCYGAVVACTLLGGQCMKAIYLLSNPNGTMKLYEFVIIFGCFMLILAQIPSFHSLRHINLVSLVLCLAYSAGATIGSIYIGDSSKGPEKDYSLKGDSVNRLFGIFNAIAIIATTYGNGIIPEIQVYLQPTNEVLEQTFGDPKSPEFSKRNVIPRVISRSLAIAISTTIAAMLPFFGDINSLIGAFGFIPLDFILPMVFYNLTFKPSKRSPVFWLNVIIVVAFSALGAIAAVAAVRQIVLDAKNYQLFANV*

>Glyma12g08980.2   sequence type=predicted peptide   gene model=Glyma12g08980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGTLLPDEKSENPNALEQLQHQKDVDAGALFVLKSKGSWMHCGYHLTTSIVAPPLLSLPYAFTFLGWTAGILSLVIGALVTFYSYNLISRVLEHHAQMGMRQLRFRDMARDILGPGWGRYFVGPIQFAVCYGAVVACTLLGGQCMKAIYLLSNPNGTMKLYEFVIIFGCFMLILAQIPSFHSLRHINLVSLVLCLAYSAGATIGSIYIGDSSKGPEKDYSLKGDSVNRLFGIFNAIAIIATTYGNGIIPEIQATLAPPVKGKMLKGLCVCYLVLIVTFFSVSVSGYWAFGNESEGLILSNFVDNGKPLVPKWFIYMTNIFTITQLSAVGVVYLQPTNEVLEQTFGDPKSPEFSKRNVIPRVISRSLAIAISTTIAAMLPFFGDINSLIGAFGFIPLDFILPMVFYNLTFKPSKRSPVFWLNVIIVVAFSALGAIAAVAAVRQIVLDAKNYQLFANV*

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