SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G22760 | AT | Annotation by Michelle Graham. TAIR10: PHD finger family protein | chr5:7571635-7577662 FORWARD LENGTH=1566 | SoyBase | E_val: 0 | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0009630 | GO-bp | Annotation by Michelle Graham. GO Biological Process: gravitropism | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| KOG1473 | KOG | Nucleosome remodeling factor, subunit NURF301/BPTF | JGI | ISS | |
| PTHR22880 | Panther | FALZ-RELATED BROMODOMAIN-CONTAINING PROTEINS | JGI | ISS | |
| PTHR22880:SF56 | Panther | PHD FINGER FAMILY PROTEIN | JGI | ISS | |
| PF00628 | PFAM | PHD-finger | JGI | ISS | |
| PF02791 | PFAM | DDT domain | JGI | ISS | |
| UniRef100_B9SN69 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: DNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9SN69_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233C459 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233C459 related cluster n=1 Tax=unknown RepID=UPI000233C459 | SoyBase | E_val: 0 | ISS |
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Glyma12g08950 not represented in the dataset |
Glyma12g08950 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma11g19530 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.12g084300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma12g08950.2 sequence type=CDS gene model=Glyma12g08950 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAACCGCCGGCTGCTCGACCGAGGGGTCGACCGAGGAAACGAAGAAGAAAGGAGGAGGAGGAGAATGAGGCCGAAGCAAAAAGGCAGGCTATGGGAACGCGAGCCATAGCTTTGGTAGGGAGGTACGTGCTCAAGGATTTTCCCGGAAACGGAATTTTTCTCGGGAAAGTGGTGTACTATGAGTGCGGATTGTACCGGGTGAGTTACGAGGATGGCGATTTTGAGGATCTCGACAGTGGAGAGGTGCGCACCATTCTCGTGAAAGATGATGAGGAGTTTGATAAAGACTTCGCCCGGAGGAGGGCCGCGTTGGAGAAATTGGTGGCGAAGAAGAATAGTGTAAAGGCCAAAGATGTTTCGGAGAGCCGTGGTGAAGGGAGGGAGGAGCAATCGGCCGTTGGGGAGGCTGAATTGAAAGGTGGGTTGGTGTTGGAGAAAAATGAAGGAGAAGGGAACGAAAATGATATGGAGGATGATTCTTCCAGTGACTCAAGCTTCGGGGAAATCGAGTCTGGGACTACTGATGCAGAGTTACTGCCGCCTATGCCGCTGCCGCCGGAGTTGCCCTCGTCGTCCGGCACCATTGGTGTACCGGAGGAGTCTGTATCCCATTTGTTTGCTGTATACGGATTCCTCAGATCATTCAGCACCCAGTTATTTCTTATGCCATTCACACTGGACGAGTTTGTGGGTGCTGTAAATTGTCGTGTTCCAAACACGGTGTTCGATGCCGTTCACCTTTCCTTGATGAAAGTGTTGCGGAGGCATCTGGAAGCCCTCTCATCGGAGGGCTCAGAGATTGCTTCCAAATGTCTCAGGTGCTATGATTGGAGCTTGCTGGATTCATTGACTTGGCCAGTTTTTGCAATTCAGTATTTAGTAGTCAGTGGACACACAACTGCTCATGAATGGCGAGGATTTTACAAAGAAGTTTCCACCGATGAATATTATTTGTTGCCTGTGAGTAGGAAGTTGATGATATTGCAAATTCTCTGTGATAATGCTCTGGAATCTGAGGAGATTGTAATGGAAATGAACATTCGGAGGGAATCAGAGGTTGGGATGGATTATGATGGAGAGGATATCCTTCCTTCAGAAGTTGGGCTTAGAAGAGTCCAGCCAAGATATGCCAATACTCCAGCTTCTGAGGATAAAGAAGCTACAAAGTTTGTTTCAGCTTCAAATGCTGTGAACCAACCTGGGAGCTCTATTTCATATTCCAGAGATACAGAAGGCACTGAAGATGGTGATGTTGATAGAAATGGAGATGAATGTCGCCTTTGTGGAATGGATGGGATCCTGCTTTGTTGTGATGGGTGTCCCTCTGCTTATCATTCAAGGTGTATTGGTGTGTTGAAAAATCATATACCAGAAGGGCCATGGTATTGTCCCGAGTGCAAAATCAATATGATGGGGCCAACCATTGCAAAGGGAACATCACTTCGAGGGGCGGAAATATTTGGAAAGGATTTGTATGGGCAACTCTTCATGGGTACCTGCGAACACTTACTTGTGCTGAATATTGGGAATGATGAGTTTTGTCATAGATATTACAATCTGAATGACATTCCCAAGGTTCTCAAAGTGCTTTATGGATCCACGGAGCACAGGGCTATATATCATGATATTTGCATGGCTGTGCTTCAATATTGCAATATTCCAGAAAGTACTTTATTATTTCCTCCTTTGGGTGAAACCCCTCTAAGTCCTGCTACTCAATGCAATGGCAACGGTAGCAGCAACGAGTGCCCTTCTTCCAAGTGCTCTTTGGTAAATGGTCAAATTGGTAACTATGACCATGCAAATGATACAGTAAATCTTTCTTCCCAAACCAAAGAAAGCACACAAGCAGGTTTTGAAAAGTGTGAACGCAATGTAACCAATGATCCTGCATACATGGGTTTCTCCTATAAGCCTTTGTTGTACATTAATCACTATGCTCATGGTGATTTTGCTGCATCAGCAGCTGCTAAATTTGCCCTTCTTTCCTCAGAGGAATCTAGATCAGAGGGCCATGTGTCAGACAATCAGAGGAAAACTGCATCTGGAAACACTTACTTGCAAGCAAAAGCATTCTCACTAACAGCTTCGCGTTTCTTTTGGCCAAGTTCTGAAAAGAAGCCTGTGGAAGTTCCAAGAGAAAGGTGTGGCTGGTGCTTTTCTTGTAAAGCCCCTGCTTCAAGCAAGAGAGGATGCATGTTAAATCATGCAGCTCTAAGTGCCACAAAAAGTGCTGTAAAAATGCTTGCTGGTTTTTCTCCTATAAGAAGTGGAGAGGCAATACTTCCTAGTATTGCAACTTACATTATATACATGGAGGAATGTCTACGTGGTTTAGTAGTTGGGCCCTTCCTAAGTGCAAGCTATAGAAGGCAATGGCGTAAGCAAGTGGAACAGGCACCAACATTTAGTGCTATCAAACCACTTTTACTTAAACTTGAGGAGAACATTCGAACGATTGTTTTTTGTGGGGACTGGGTTAAGCTGATGGATGATTGGTTGGTTGAATTTTCCATGGTACAAAGTGCCTCATCTACTCTTGGAACAGCACAGAAACGTGCACCAAGTGGTAGGCGTTACAAGAAGCGGTTAGCTAATGATGAAGCTACAGCTGATGGTTGCCCTGAAAACTTTGTGTGGTGGCGTGGTGGCAAATTCACCAAATTTATATTCCAGAAAGCAGTCTTGCCAAAATCCATGGTCAGGAAAGCAGCACGTCAAGGTGGTTCAAGAAAAATTTCTGGCATTTTTTATGCTGATGGCTCTGAAATTCCCAAGAGAAGTAGACAACTTGTTTGGAGAGTTGCAGTTCAAATGAGTAGGAATGCATCACAGCTGGCACTTCAGGTCAGGTACCTAGATTTTTATCTCAGATGGAGTGATCTGATTCGTCCTGAGCAGAACATCCAGGATGGGAAAGGTCAAGAGACTGAAGCTTCTGCTTTCAGAAATGCAAATATTTGTGACAATAAACTTGTAGAGGGGAAAAGTTGTTATGGAATAGCTTTTGGGAGCCAAAAACATCTTCCTTCTCGGGTGATGAAAAATGTTGTTCAAGTGGAGCAAGATCCAGAAGGAAAGGAAAAGTATTGGTTTTTTGAAACACGTATTCCATTATATTTGATAAAAGAGTATGAAGAAGGTAATGGAAATATGCCATGTAATGAGGAGCACTTGAATACTGCATCTGAGTTGCTGCACAGAAGGCGGTTGAAGGCTATCTGCAAGGACATATTTTTTTACCTAACATGCAAGAGAGATAACTTGGATGTGGTGTCATGTTCTGTATGTCAGATGGGTGTTTTAATTCGGGATGCTCACAAGTGCAATGCATGCCAAGGTTATTGTCACGAGGGCTGTTCAACAAGATCAACAGTCTCGGCAAATGAAGTTGAGTACTTGACTACATGCAAGCAATGCTACCATGCCAGATTACTTGCTCAGAAAGAGAATACTAATGAATCTCCAACCAGTCCATTACTCCTACAAGGACGAGAGAATAACTCTGGGACATTTTTGAATGGATCAAGGCCTAAATCTCATGATCAAGTACTGAAATCTTCCAGGACAAAGGCTAATAATCCCAACGTGAAACAAGTTACTCCTGTGACGGCTTTGAAAGGAACAAAGGCTAAATATTATGAACAAGAACCGACTTCTACCAGGACAAAGGATAATAATCATTTTGGCACGCCTCAAGTTGCTTCTGAGGCCACTTTGACAGGAAAAAAACCTCGCAAAAATTGTTCTTGGGGTATTATATGGCAAAAGAAAAATAATGAAGATACAGACAATGATTTCTGGCTCAGAAACATACTTTTGAAAGGGGGTTCAAACATGCCACAGTTAAAACCTGTTTGTCACTTGTGTCGGAAGCCATATATGTCTGATCTGACGTATATTTGCTGTGAGACATGCCGAAATTGGTATCACGCTGAAGCTGTTGAACTTGAAGAATCCAAAATTTCTAGTGTGTTGGGCTTCAAATGTTGCAAGTGTCGAAGGATAAAATCACCTGTTTGTCCATACTCTGATTTGAAGCCTAAGAGACAAGAGGGCAAGAAGTCACGCACAAGGACTAAAAAGAAAGAGCATTCTGGAGCAGACTCCGATTCTGGAGCAATCTATTATGATATGAGAGATTGTGAAGTTGCTACTCCTGTCTTTCATGTAGAGGATGATCCCAGTCATGTCTTTCCTGTAGAGGGTGATCCTACTCACGTCTTTCCTGTAGAGGATGATCCTCTTCTTTTCTCTCTTTCGAGTGTTGAGCTGCTAACAGAACCTAAGATGGAAGGGGATGTTGAGTGGAACAGTGTCCCTGGGCCAGGGCTTCGGAAATTGCCAGTGAGAAGGAATGTTAAGCATGAAGGGGATGGTGATGTTTCTTTTGGAGGTATGCCTGCAGATGTATCTCCACCTTTAGAATATGCCTCTGCTGTTGACTTTGACAACAAGCTGCTGAATGACTCTGATAATGTAAACTATGATGATTACATGGATTTTGAACCCAATACCTATTTCTCTCTAACGGAACTGCTGCAGCCAGATGATGGTAGTCAGTTTGAGGGTGTTGATGTGTCTGCGGACTTGTCGGGATATTTGGAAAATTCTAGTACCCTTATTCCTGAAGAACGTGGAGATGATAAAACAGAACCTGCATTTTCCTTGCAAGACACCGGCGGGGACTTGTCAGGATATTTGGAAAATTCTATTACATTTATTCCTGAAGAATGTGGAGATGTTATGACAGAACCTACATTTTCCTTGCAAGACACTGGCTTTAGTTGTATGAAATGTTCACAAATGGAACCGGCCCCTGATCTCTTTTGTGAGATTTGTGGGATTTTGATTCACAGCCAATGTTCGCCTTGGGTTGAAATACCATCTAGGCTTGGAAGTTGGAGGTGTGGGAATTGCCGGGATTGGTAA
>Glyma12g08950.2 sequence type=predicted peptide gene model=Glyma12g08950 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEPPAARPRGRPRKRRRKEEEENEAEAKRQAMGTRAIALVGRYVLKDFPGNGIFLGKVVYYECGLYRVSYEDGDFEDLDSGEVRTILVKDDEEFDKDFARRRAALEKLVAKKNSVKAKDVSESRGEGREEQSAVGEAELKGGLVLEKNEGEGNENDMEDDSSSDSSFGEIESGTTDAELLPPMPLPPELPSSSGTIGVPEESVSHLFAVYGFLRSFSTQLFLMPFTLDEFVGAVNCRVPNTVFDAVHLSLMKVLRRHLEALSSEGSEIASKCLRCYDWSLLDSLTWPVFAIQYLVVSGHTTAHEWRGFYKEVSTDEYYLLPVSRKLMILQILCDNALESEEIVMEMNIRRESEVGMDYDGEDILPSEVGLRRVQPRYANTPASEDKEATKFVSASNAVNQPGSSISYSRDTEGTEDGDVDRNGDECRLCGMDGILLCCDGCPSAYHSRCIGVLKNHIPEGPWYCPECKINMMGPTIAKGTSLRGAEIFGKDLYGQLFMGTCEHLLVLNIGNDEFCHRYYNLNDIPKVLKVLYGSTEHRAIYHDICMAVLQYCNIPESTLLFPPLGETPLSPATQCNGNGSSNECPSSKCSLVNGQIGNYDHANDTVNLSSQTKESTQAGFEKCERNVTNDPAYMGFSYKPLLYINHYAHGDFAASAAAKFALLSSEESRSEGHVSDNQRKTASGNTYLQAKAFSLTASRFFWPSSEKKPVEVPRERCGWCFSCKAPASSKRGCMLNHAALSATKSAVKMLAGFSPIRSGEAILPSIATYIIYMEECLRGLVVGPFLSASYRRQWRKQVEQAPTFSAIKPLLLKLEENIRTIVFCGDWVKLMDDWLVEFSMVQSASSTLGTAQKRAPSGRRYKKRLANDEATADGCPENFVWWRGGKFTKFIFQKAVLPKSMVRKAARQGGSRKISGIFYADGSEIPKRSRQLVWRVAVQMSRNASQLALQVRYLDFYLRWSDLIRPEQNIQDGKGQETEASAFRNANICDNKLVEGKSCYGIAFGSQKHLPSRVMKNVVQVEQDPEGKEKYWFFETRIPLYLIKEYEEGNGNMPCNEEHLNTASELLHRRRLKAICKDIFFYLTCKRDNLDVVSCSVCQMGVLIRDAHKCNACQGYCHEGCSTRSTVSANEVEYLTTCKQCYHARLLAQKENTNESPTSPLLLQGRENNSGTFLNGSRPKSHDQVLKSSRTKANNPNVKQVTPVTALKGTKAKYYEQEPTSTRTKDNNHFGTPQVASEATLTGKKPRKNCSWGIIWQKKNNEDTDNDFWLRNILLKGGSNMPQLKPVCHLCRKPYMSDLTYICCETCRNWYHAEAVELEESKISSVLGFKCCKCRRIKSPVCPYSDLKPKRQEGKKSRTRTKKKEHSGADSDSGAIYYDMRDCEVATPVFHVEDDPSHVFPVEGDPTHVFPVEDDPLLFSLSSVELLTEPKMEGDVEWNSVPGPGLRKLPVRRNVKHEGDGDVSFGGMPADVSPPLEYASAVDFDNKLLNDSDNVNYDDYMDFEPNTYFSLTELLQPDDGSQFEGVDVSADLSGYLENSSTLIPEERGDDKTEPAFSLQDTGGDLSGYLENSITFIPEECGDVMTEPTFSLQDTGFSCMKCSQMEPAPDLFCEICGILIHSQCSPWVEIPSRLGSWRCGNCRDW*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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