Glyma12g08930 - SoyBase

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Report for Sequence Feature Glyma12g08930

Feature Type:	gene_model
Chromosome:	Gm12
Start:	6693089
stop:	6695972
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g08930

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G08200	AT	Annotation by Michelle Graham. TAIR10: UDP-D-apiose/UDP-D-xylose synthase 2 \| chr1:2574259-2576609 REVERSE LENGTH=389	SoyBase	E_val: 0	ISS
GO:0009226	GO-bp	Annotation by Michelle Graham. GO Biological Process: nucleotide-sugar biosynthetic process	SoyBase	N/A	ISS
GO:0044237	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular metabolic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0048046	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: apoplast	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0048040	GO-mf	Annotation by Michelle Graham. GO Molecular Function: UDP-glucuronate decarboxylase activity	SoyBase	N/A	ISS
GO:0050662	GO-mf	Annotation by Michelle Graham. GO Molecular Function: coenzyme binding	SoyBase	N/A	ISS
KOG1429	KOG	dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase	JGI		ISS
PTHR10366	Panther	NAD DEPENDENT EPIMERASE/DEHYDRATASE	JGI		ISS
PTHR10366:SF147	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF01370	PFAM	NAD dependent epimerase/dehydratase family	JGI		ISS
UniRef100_D2D333	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: UDP-D-apiose/UPD-D-xylose synthetase n=1 Tax=Gossypium hirsutum RepID=D2D333_GOSHI	SoyBase	E_val: 0	ISS
UniRef100_I1LRB8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LRB8_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma12g08930

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g08930

Paralog	Evidence	Comments
Glyma11g19550	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g08930 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g084100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g08930

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma12g08930

Limit To All Plant Sequences

>Glyma12g08930.1   sequence type=CDS   gene model=Glyma12g08930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGCGAGTGGATCTGGACGGGAACCCCATGAAGGCACTTACGATCTGCATGATCGGCGCTGGCGGCTTCATAGGCTCGCATCTCTGCGAGAAGCTCATGTCCGAAACCCCTCACACCGTCCTCGCCCTCGACGTCTACAACGACAAGATCAAACACCTCCTCGAACCCTCCGATTCCCCCTGGGCCGGCCGCATCACCTTCCACCGCCTCAACATCAAACACGACTCTCGCCTCGAAGGCCTCATCAAGATGGCAGATCTCACTATTAATCTGGCTGCCATTTGCACTCCCGCGGATTACAACACCCGCCCTCTCGACACCATTTACAGCAATTTCATCGACGCGCTCCCCGTGGTGAAATACTGTTCCGAGAACAACAAGCGCCTTATCCATTTCTCTACTTGCGAAGTGTACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAGGATCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTTTTGGTTCTATTGAAAAACAGAGGTGGTCTTATGCCTGTGCGAAACAGTTGATTGAGAGGCTGATTTATGCTGAGGGTGCTGAAAATGGCTTGGAGTTCACAATTGTGAGGCCTTTTAACTGGATTGGACCTCGAATGGATTTCATTCCTGGCATTGATGGTCCAAGTGAGGGTGTTCCTCGGGTTCTTGCATGCTTTAGCAATAATCTTCTCAGAGGAGAGCCCCTCAAGCTTGTGGACGGTGGCCAGTCCCAGAGAACCTTTGTTTACATTAAAGATGCTATTGAAGCTGTCTTGCTGATGATTGAAAACCCTGCCAGGGCCAATGGCCACATATTTAATGTGGGTAACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGGTTTATTCAAAGGTAAGTGGCGAACAAACTCCTGAAACACCTACCGTTGATGTGAGCTCAAAAGAATTTTATGGTGAGGGATATGATGATAGTGACAAGAGAATCCCTGACATGACCATAATAAACAGGCAGCTTGGATGGAATCCCAAGACTTCACTTTGGGACCTGCTTGAGTCCACTCTGACATATCAGCACAGGACATATGCTGAAGCCGTTAAGAAAGTCATTGCAAAACCCGTTGCAAGTTAA

Predicted protein sequences of Glyma12g08930

Limit To All Plant Sequences

>Glyma12g08930.1   sequence type=predicted peptide   gene model=Glyma12g08930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MARVDLDGNPMKALTICMIGAGGFIGSHLCEKLMSETPHTVLALDVYNDKIKHLLEPSDSPWAGRITFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGAFLPKDSPLRKDPAYYVLKEDESPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRGEPLKLVDGGQSQRTFVYIKDAIEAVLLMIENPARANGHIFNVGNPNNEVTVRQLAEIMIKVYSKVSGEQTPETPTVDVSSKEFYGEGYDDSDKRIPDMTIINRQLGWNPKTSLWDLLESTLTYQHRTYAEAVKKVIAKPVAS*

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