SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G44830 | AT | Annotation by Michelle Graham. TAIR10: Lecithin:cholesterol acyltransferase family protein | chr3:16368890-16372356 FORWARD LENGTH=665 | SoyBase | E_val: 0 | ISS |
| GO:0006629 | GO-bp | Annotation by Michelle Graham. GO Biological Process: lipid metabolic process | SoyBase | N/A | ISS |
| GO:0009873 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ethylene mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0004607 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: phosphatidylcholine-sterol O-acyltransferase activity | SoyBase | N/A | ISS |
| GO:0008374 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: O-acyltransferase activity | SoyBase | N/A | ISS |
| KOG2369 | KOG | Lecithin:cholesterol acyltransferase (LCAT)/Acyl-ceramide synthase | JGI | ISS | |
| PTHR11440 | Panther | LECITHIN-CHOLESTEROL ACYLTRANSFERASE-RELATED | JGI | ISS | |
| PTHR11440:SF6 | Panther | PHOSPHATIDYLCHOLINE-STEROL ACYLTRANSFERASE-RELATED | JGI | ISS | |
| PF00657 | PFAM | GDSL-like Lipase/Acylhydrolase | JGI | ISS | |
| PF02450 | PFAM | Lecithin:cholesterol acyltransferase | JGI | ISS | |
| UniRef100_F8RNW6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Phospholipid:diacylglycerol acyltransferase n=1 Tax=Ricinus communis RepID=F8RNW6_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233C457 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233C457 related cluster n=1 Tax=unknown RepID=UPI000233C457 | SoyBase | E_val: 0 | ISS |
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Glyma12g08915 not represented in the dataset |
Glyma12g08915 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma11g19570 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma12g08915.1 sequence type=CDS gene model=Glyma12g08915 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTTTCAATTTCGAAGTTGAAGAAGTTCTACTTGGTGGAGCCATTGAAGTCATCTTCCCTTGGTTTTCATTCTTTTGAAGAAACCAAGAAGTGTGAGAGCATTGTTATAAATGAAGTGGAAGGAAAGAGGCAAAAGAAGCATAGAAAGAAGCAGTGTAAGGATTGGAGGTGCATTGATTATTGCTTTTGGATGATAGGGTACATGTGCACCACTTGGTGGCTTCTCTCTTTGTTGTATGGTTGCTTGCCTGCCATGTTGCTTGGCTTTGAGGCACCAGTGTCACCTGGGGTGAGGCTAAGTCGTGAGGGAGTCACTGCACTTCACCCAGTTGTTCTTGTACCGGGCATTGTGACTGGTGGGTTGGAGCTATGGGAAGGGAGGTCTTGTGCAGAGGGCCTTTTCAGAAAGCGGTTGTGGGGTGATAGTTTTGCTCAAATCCTCAAAAGGCCTTTGTGCTGGTTAGAGCATCTCTCTTTGCATGATGAGACTGGTCTGGACCCTCCAGGCATTAGAGTCAGGGCAGTGCCTGGGCTTGTTGCTGCAGATAATTTTGCTTCTGGTTATCTTCTTTGGGCAGATTTGATTGAAAATTTGGCAAGAATTGGTTATGAAGGGAAGAATTTGTTTATGGCTGCCTATGACTGGAGACTGTCTTTCCAGAATACTGAGATTCGAGACCAAGCACTTAGTAGATTGAAGAGTCATATTGAGCTTATGTTTGTAACCAATGGCTATAAGAAAGTGGTGGTGGTACCACAATCTATGGGGGCTATTTATTTTCTCCATTTCCTAAAATGGGTTGAGACACCTCCTCCCATGGGAGGCGGCAGCGGTCCGGGTTGGTGTGACAAGTACATCAAAGCAATCATGAATGTTAGCCCTGCATTTCTTGGTGATCCTAGGGCTGTTAGCAATATATTTTCAACCGAAAGCAGTATGATGGAGTCACTCAATTTTTTCAGAACTGTGGCTTCTGGCATTTTAAATTTTGATTACGTTGGTCGTCAAACTCTTGAGCACGCCATGCGAGTGTGTAGAACGTGGGATTCAATCATCTCATTGATGCCAAAAGGTGGTGAAACCATCTGGGGTGGCTTGGATTGGTGTCTTGAAGACTGGAATAACTATGATCAGGAAATTTCATGGGGAAGTAATTCTGCTACTTTTAACTTATCATATGAGGCTGTGTGGATTGATTGTGATGAGATGAGCAGAGAAAGCATTCAAAAAATTTCTAAAAAAAGAGCTTATACTGCAAGAACAGTTTTTGATATACTTAACTTTGTGGCTCCAAAAATGATGAAGCGTGCTGAGGCTCACTTCTCTCACGGGATAGCAGAGAACTTAGAAGATCCTAAATATGCTCATTACAGATACTGGTCTAATCCACTTGAAACCAAACTACCAGATGCTCCGGATATGGAAATATACTGTCTTTATGGAGTTGGAATTCCGACTGAAAGATCACATGTACACAAGTTCTACCCTTCTGAAAAGGACAAGAGTATTCCTTTCCAAATTGATAGTTCAGCAGATGGAGAAGATGGAAGTTGGCTACACAATGGTGTTTATTTTGTGGATGGTGATGAGAGTGTACCTATTGTAAGCTCAGGGTTCATGTGCGCCAAAGGATGGCACGGAAGAACACGGTTCAATCCATCTGGCACGGCTACATATACAATAGAGTATCAGCTAAAACAACCAGGTGGTCTTATTGATCGGAGAGGCCTAGAGAATGGAGCAAGTTCCAACATTATGGGAAATGCTGCCTTAATTGAAGATGTTTTACTAGTAGCTGCTGGAGCCACTGGAGTAGATATTGGAGGTGATAGGATATTTTCAGATATAATGAGGATATGCGTGGCAGAAGAAGGTTGTGATCGAAGTGGTGCTGCCACTTTAGTAAAGAAGGCACGCAATACAAAACCTAAGTGGTCACCAACCACATTAATACGTCCAAATACAAGTTACTACTACGTCCCTTTCAGTATTCTTTCTAATTTCTTCTTTCTTTTCCTTTTGTTTTCTCTATACATGTTCTTAGTTGAGTTCATTTGTGTCCTGTTGTATACATTTGGTAGTATGAAGCTCATTGCTGAAGAGGAATTGAAAAGAATGGGGTATTCAAGGTCTTTCTTGGCTTCTTTGCTTCTTGCTGTGTTTCTCAATGTGACTAATGGGCAGCCTCTAGTCCCTGCAATGTTCACATTTGGGGACTCAATTGTTGATGTGGGCAATAATAACCACCAATTGACTATTGTTAAAGCAAACTTCCCTCCTTATGGAAGAGACTTTGAGAATCAGTATCGCACAGGAAGGTTCTGCAATGGAAAGCTTGCAACAGACTTCATTGCTGAAATCATTGGATTTACCTCTTATCAACCAGCCTACCTCAACTTAAAGACCAAAGGAAAGAACCTTTTGAATGGTGCCAACTTGCCTCAGCTTCTGCTGAATTCAATTCCGTTGAGCAAGCAGCTGGAATACTACAAAGAGTGCCAGACCAAATTGTCAATTATATCTGATGCTATATATCTTATTAGTGCTGGGACCAGTGATTTTGTTCAGAACTACTACATAAATCCTCTGCTTAGCAAGCTTTATACAACTGATCAATTCTCAGACATTCTCTTGCGATGCTATTCCAGTTTCATTCAGAGTTTATATGCATTGGGAGCAAGGAGGATTGGTGTGACAACATTACCTCCAATAGGCTACCTGCCTGGAGCCATCACTCTCTTTGGAGCTCATACCAACGAATGTGTGACAAGTTTAAACAGTGATGCAATTAACTTCAATGAAAAGATCAACACCACATCTCAGAACTTGAAAAATATGCTTCCAGGCCTCAATTTGGTTGTCTTTGATATCTACCAACCCCTCTATGACTTGGTCACCAAGCCTTCTGAAAATGGATTTTTTGAAGCAAGGAAGGCTTGTTGTGGAACTGGGTTGATAGAGACATTGTGCAATAAGAAGTCCATAGGAACATGTGATCATACTTACCTTAAAATCGTAATAGTAAAATATGGATAA
>Glyma12g08915.1 sequence type=predicted peptide gene model=Glyma12g08915 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVSISKLKKFYLVEPLKSSSLGFHSFEETKKCESIVINEVEGKRQKKHRKKQCKDWRCIDYCFWMIGYMCTTWWLLSLLYGCLPAMLLGFEAPVSPGVRLSREGVTALHPVVLVPGIVTGGLELWEGRSCAEGLFRKRLWGDSFAQILKRPLCWLEHLSLHDETGLDPPGIRVRAVPGLVAADNFASGYLLWADLIENLARIGYEGKNLFMAAYDWRLSFQNTEIRDQALSRLKSHIELMFVTNGYKKVVVVPQSMGAIYFLHFLKWVETPPPMGGGSGPGWCDKYIKAIMNVSPAFLGDPRAVSNIFSTESSMMESLNFFRTVASGILNFDYVGRQTLEHAMRVCRTWDSIISLMPKGGETIWGGLDWCLEDWNNYDQEISWGSNSATFNLSYEAVWIDCDEMSRESIQKISKKRAYTARTVFDILNFVAPKMMKRAEAHFSHGIAENLEDPKYAHYRYWSNPLETKLPDAPDMEIYCLYGVGIPTERSHVHKFYPSEKDKSIPFQIDSSADGEDGSWLHNGVYFVDGDESVPIVSSGFMCAKGWHGRTRFNPSGTATYTIEYQLKQPGGLIDRRGLENGASSNIMGNAALIEDVLLVAAGATGVDIGGDRIFSDIMRICVAEEGCDRSGAATLVKKARNTKPKWSPTTLIRPNTSYYYVPFSILSNFFFLFLLFSLYMFLVEFICVLLYTFGSMKLIAEEELKRMGYSRSFLASLLLAVFLNVTNGQPLVPAMFTFGDSIVDVGNNNHQLTIVKANFPPYGRDFENQYRTGRFCNGKLATDFIAEIIGFTSYQPAYLNLKTKGKNLLNGANLPQLLLNSIPLSKQLEYYKECQTKLSIISDAIYLISAGTSDFVQNYYINPLLSKLYTTDQFSDILLRCYSSFIQSLYALGARRIGVTTLPPIGYLPGAITLFGAHTNECVTSLNSDAINFNEKINTTSQNLKNMLPGLNLVVFDIYQPLYDLVTKPSENGFFEARKACCGTGLIETLCNKKSIGTCDHTYLKIVIVKYG*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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