Glyma12g08870 - SoyBase

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Report for Sequence Feature Glyma12g08870

Feature Type:	gene_model
Chromosome:	Gm12
Start:	6626044
stop:	6631313
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g08870

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G22850	AT	Annotation by Michelle Graham. TAIR10: Eukaryotic aspartyl protease family protein \| chr5:7633717-7636298 REVERSE LENGTH=493	SoyBase	E_val: 0	ISS
GO:0006508	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteolysis	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0004190	GO-mf	Annotation by Michelle Graham. GO Molecular Function: aspartic-type endopeptidase activity	SoyBase	N/A	ISS
KOG1339	KOG	Aspartyl protease	JGI		ISS
PTHR13683	Panther	ASPARTYL PROTEASES	JGI		ISS
PTHR13683:SF98	Panther	CHLOROPLAST NUCLEIOD DNA-BINDING-RELATED	JGI		ISS
PF00026	PFAM	Eukaryotic aspartyl protease	JGI		ISS
UniRef100_I1LRB2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LRB2_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q0WRU5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Aspartyl protease family protein n=1 Tax=Arabidopsis thaliana RepID=Q0WRU5_ARATH	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma12g08870

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g08870

Paralog	Evidence	Comments
Glyma11g19640	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g08870 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g083600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g08870

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma12g08870

Limit To All Plant Sequences

>Glyma12g08870.2   sequence type=transcript   gene model=Glyma12g08870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGTTTACGTAATCCATTATTATTGTATATGTGAACGAAACTTGCAACCAGCAGCAACTATCAGGTTCGTTGAGGTTAGAACACAACACACTTTCTCTCTCTTTGTCTCTCTCTCTAGAATCACGATCATGAAGTACAGCAACAACAGCACCACCAATTTCTGCGCCGCGTTGTTTTTTGTTCTCATATTCCATTAGTGTCAGTGTCACTGTCTCTATTCCGCTTCACTTTCCCTTCTTCTTCTTCCACTCTTTCCAACCGACACAAAAATGGAAACGGTGGCCGCCGCTTTTTTCTTCGCCGCCGTGGTTCTGTCGGCGGTTGGCGGGTCGCCGGTGACTCTGACGCTGGAAAGAGCGTTCCCTTCGAATGATGGGGTGGAATTGAGTGAGCTCAGAGCGAGGGACAGCCTCAGACATCGTAGAATGTTGCAGTCTACTAACTACGTTGTAGATTTCCCTGTCAAAGGCACCTTCGATCCCTCACAAGTCGGGCTTTACTATACAAAGGTGAAATTGGGTACTCCTCCAAGGGAATTCTATGTGCAGATTGACACTGGCAGTGATGTTCTCTGGGTTAGTTGTGGGTCCTGCAACGGTTGTCCTCAGACAAGTGGGCTCCAAATTCAGCTCAATTACTTTGATCCTCGGAGTTCATCAACATCTTCGTTGATCTCTTGTTCAGACCGAAGGTGCAGGAGTGGAGTACAGACCTCGGATGCAAGCTGTTCCAGTCAGAACAACCAGTGCACTTACACATTTCAGTATGGAGATGGTAGTGGGACATCAGGCTATTATGTCTCAGACTTGATGCATTTTGCTGGTATTTTTGAGGGAACCTTGACAACAAATTCTTCGGCATCTGTAGTTTTTGGTTGTAGCATCCTGCAGACTGGGGACTTAACAAAGTCTGAGAGAGCAGTTGATGGGATATTCGGATTTGGGCAACAGGGCATGTCTGTCATTTCCCAACTCTCGTTGCAGGGAATAGCACCAAGAGTGTTCTCCCATTGCCTGAAAGGAGATAATAGTGGTGGGGGCGTATTGGTTCTTGGTGAAATTGTGGAGCCAAACATAGTTTATAGTCCACTTGTTCAATCACAGCCACATTACAATTTAAATCTGCAGAGCATCTCTGTTAATGGCCAAATTGTGCCAATTGCCCCTGCAGTTTTTGCTACATCAAACAACAGAGGTACCATTGTTGATTCTGGAACAACTTTGGCATACCTTGCAGAAGAGGCTTACAATCCCTTTGTCAATGCGATTACAGCTCTTGTTCCACAATCTGTACGCAGTGTTCTTTCCAGAGGAAATCAGTGTTACTTAATAACCACCTCCAGCAATGTTGACATTTTTCCACAAGTAAGTCTGAACTTCGCTGGTGGTGCATCTCTGGTTTTAAGACCACAGGATTACCTTATGCAGCAGAATTATATTGGCGAGGGATCAGTGTGGTGTATTGGCTTTCAGAGAATTCCGGGGCAAAGTATAACTATTCTAGGAGACCTCGTATTAAAAGACAAAATTTTTGTCTACGATCTTGCTGGTCAACGCATTGGATGGGCTAACTATGATTGTGAGTATCACCTACACTACACTGAAGGGACATAGAGAATAACGTGTAAATAAGGATTCCTTGTACTTATGAAATAAGGCTTCTTTACAGAGCAGGTCCAAGGATAAGGCTATTAAAGCTCAAAACTTTAATCCCACCAACAAAAAACTATTTGTTAAATTTTTATGAAGTTAAAAAAACCACATATATTCACAAAATGGCCCAACATATATAGCTCTCTCATTTAAAGTAAACAAGTATCTTTCAAATTTTGTTTTAGGTCTTGTTCACCATTGGGTCAGCGCTGCTTCTTTAAGGTTGTGTTACATTGTATGTGTTTTAGGCTACATCATATTCTAATATGTTTTTCAATTTAAATTCATTAATATAGGTTCATTGCCGGTTAATGTATCTGCATCAGCTGGTAGGGGCAGAAGTGAGTTTGTGGACGCGGGAGAGCTAAGTGGCAGCTCTTCTTTACGTGCTGGGCTTCACATGTTGATAAATACACTGTTCCTTGCTCTCTTCATGCACATAACTTTAATTTTGTAGCATGTGGAATTGGAACTGATATTCTTTTTTGCTATGTATATTCTCTTGCCGCTATATAATTGCGGCATTGTGCAAGACCACACGTTACTACTTGGATTGTTGCTTGTGTTTTTTTTTCCTACACAGTATAGGGTTGTCTGTTTTAGCTTCATGTGTTTATGTAAGTCACTCATTTTGCCTCTCGGGGATTTTGTATTTTTGTAGCATTGTAAATTAACATGATTATTGATTGAAATTTGAAACGAAGATACAAGTTATACCTCATTTTTGGAGTTTTCATCTTCAAATCTCCCTTAATCGGGAACAAAATGATAAATTATATTTCAAAAAC

Coding sequences of Glyma12g08870

Limit To All Plant Sequences

>Glyma12g08870.1   sequence type=CDS   gene model=Glyma12g08870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAACGGTGGCCGCCGCTTTTTTCTTCGCCGCCGTGGTTCTGTCGGCGGTTGGCGGGTCGCCGGTGACTCTGACGCTGGAAAGAGCGTTCCCTTCGAATGATGGGGTGGAATTGAGTGAGCTCAGAGCGAGGGACAGCCTCAGACATCGTAGAATGTTGCAGTCTACTAACTACGTTGTAGATTTCCCTGTCAAAGGCACCTTCGATCCCTCACAAGTCGGGCTTTACTATACAAAGGTGAAATTGGGTACTCCTCCAAGGGAATTCTATGTGCAGATTGACACTGGCAGTGATGTTCTCTGGGTTAGTTGTGGGTCCTGCAACGGTTGTCCTCAGACAAGTGGGCTCCAAATTCAGCTCAATTACTTTGATCCTCGGAGTTCATCAACATCTTCGTTGATCTCTTGTTCAGACCGAAGGTGCAGGAGTGGAGTACAGACCTCGGATGCAAGCTGTTCCAGTCAGAACAACCAGTGCACTTACACATTTCAGTATGGAGATGGTAGTGGGACATCAGGCTATTATGTCTCAGACTTGATGCATTTTGCTGGTATTTTTGAGGGAACCTTGACAACAAATTCTTCGGCATCTGTAGTTTTTGGTTGTAGCATCCTGCAGACTGGGGACTTAACAAAGTCTGAGAGAGCAGTTGATGGGATATTCGGATTTGGGCAACAGGGCATGTCTGTCATTTCCCAACTCTCGTTGCAGGGAATAGCACCAAGAGTGTTCTCCCATTGCCTGAAAGGAGATAATAGTGGTGGGGGCGTATTGGTTCTTGGTGAAATTGTGGAGCCAAACATAGTTTATAGTCCACTTGTTCAATCACAGCCACATTACAATTTAAATCTGCAGAGCATCTCTGTTAATGGCCAAATTGTGCCAATTGCCCCTGCAGTTTTTGCTACATCAAACAACAGAGGTACCATTGTTGATTCTGGAACAACTTTGGCATACCTTGCAGAAGAGGCTTACAATCCCTTTGTCAATGCGATTACAGCTCTTGTTCCACAATCTGTACGCAGTGTTCTTTCCAGAGGAAATCAGTGTTACTTAATAACCACCTCCAGCAATGTTGACATTTTTCCACAAGTAAGTCTGAACTTCGCTGGTGGTGCATCTCTGGTTTTAAGACCACAGGATTACCTTATGCAGCAGAATTATATTGGCGAGGGATCAGTGTGGTGTATTGGCTTTCAGAGAATTCCGGGGCAAAGTATAACTATTCTAGGAGACCTCGTATTAAAAGACAAAATTTTTGTCTACGATCTTGCTGGTCAACGCATTGGATGGGCTAACTATGATTGTTCATTGCCGGTTAATGTATCTGCATCAGCTGGTAGGGGCAGAAGTGAGTTTGTGGACGCGGGAGAGCTAAGTGGCAGCTCTTCTTTACGTGCTGGGCTTCACATGTTGATAAATACACTGTTCCTTGCTCTCTTCATGCACATAACTTTAATTTTGTAG

>Glyma12g08870.2   sequence type=CDS   gene model=Glyma12g08870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAACGGTGGCCGCCGCTTTTTTCTTCGCCGCCGTGGTTCTGTCGGCGGTTGGCGGGTCGCCGGTGACTCTGACGCTGGAAAGAGCGTTCCCTTCGAATGATGGGGTGGAATTGAGTGAGCTCAGAGCGAGGGACAGCCTCAGACATCGTAGAATGTTGCAGTCTACTAACTACGTTGTAGATTTCCCTGTCAAAGGCACCTTCGATCCCTCACAAGTCGGGCTTTACTATACAAAGGTGAAATTGGGTACTCCTCCAAGGGAATTCTATGTGCAGATTGACACTGGCAGTGATGTTCTCTGGGTTAGTTGTGGGTCCTGCAACGGTTGTCCTCAGACAAGTGGGCTCCAAATTCAGCTCAATTACTTTGATCCTCGGAGTTCATCAACATCTTCGTTGATCTCTTGTTCAGACCGAAGGTGCAGGAGTGGAGTACAGACCTCGGATGCAAGCTGTTCCAGTCAGAACAACCAGTGCACTTACACATTTCAGTATGGAGATGGTAGTGGGACATCAGGCTATTATGTCTCAGACTTGATGCATTTTGCTGGTATTTTTGAGGGAACCTTGACAACAAATTCTTCGGCATCTGTAGTTTTTGGTTGTAGCATCCTGCAGACTGGGGACTTAACAAAGTCTGAGAGAGCAGTTGATGGGATATTCGGATTTGGGCAACAGGGCATGTCTGTCATTTCCCAACTCTCGTTGCAGGGAATAGCACCAAGAGTGTTCTCCCATTGCCTGAAAGGAGATAATAGTGGTGGGGGCGTATTGGTTCTTGGTGAAATTGTGGAGCCAAACATAGTTTATAGTCCACTTGTTCAATCACAGCCACATTACAATTTAAATCTGCAGAGCATCTCTGTTAATGGCCAAATTGTGCCAATTGCCCCTGCAGTTTTTGCTACATCAAACAACAGAGGTACCATTGTTGATTCTGGAACAACTTTGGCATACCTTGCAGAAGAGGCTTACAATCCCTTTGTCAATGCGATTACAGCTCTTGTTCCACAATCTGTACGCAGTGTTCTTTCCAGAGGAAATCAGTGTTACTTAATAACCACCTCCAGCAATGTTGACATTTTTCCACAAGTAAGTCTGAACTTCGCTGGTGGTGCATCTCTGGTTTTAAGACCACAGGATTACCTTATGCAGCAGAATTATATTGGCGAGGGATCAGTGTGGTGTATTGGCTTTCAGAGAATTCCGGGGCAAAGTATAACTATTCTAGGAGACCTCGTATTAAAAGACAAAATTTTTGTCTACGATCTTGCTGGTCAACGCATTGGATGGGCTAACTATGATTGTGAGTATCACCTACACTACACTGAAGGGACATAG

Predicted protein sequences of Glyma12g08870

Limit To All Plant Sequences

>Glyma12g08870.1   sequence type=predicted peptide   gene model=Glyma12g08870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
METVAAAFFFAAVVLSAVGGSPVTLTLERAFPSNDGVELSELRARDSLRHRRMLQSTNYVVDFPVKGTFDPSQVGLYYTKVKLGTPPREFYVQIDTGSDVLWVSCGSCNGCPQTSGLQIQLNYFDPRSSSTSSLISCSDRRCRSGVQTSDASCSSQNNQCTYTFQYGDGSGTSGYYVSDLMHFAGIFEGTLTTNSSASVVFGCSILQTGDLTKSERAVDGIFGFGQQGMSVISQLSLQGIAPRVFSHCLKGDNSGGGVLVLGEIVEPNIVYSPLVQSQPHYNLNLQSISVNGQIVPIAPAVFATSNNRGTIVDSGTTLAYLAEEAYNPFVNAITALVPQSVRSVLSRGNQCYLITTSSNVDIFPQVSLNFAGGASLVLRPQDYLMQQNYIGEGSVWCIGFQRIPGQSITILGDLVLKDKIFVYDLAGQRIGWANYDCSLPVNVSASAGRGRSEFVDAGELSGSSSLRAGLHMLINTLFLALFMHITLIL*

>Glyma12g08870.2   sequence type=predicted peptide   gene model=Glyma12g08870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
METVAAAFFFAAVVLSAVGGSPVTLTLERAFPSNDGVELSELRARDSLRHRRMLQSTNYVVDFPVKGTFDPSQVGLYYTKVKLGTPPREFYVQIDTGSDVLWVSCGSCNGCPQTSGLQIQLNYFDPRSSSTSSLISCSDRRCRSGVQTSDASCSSQNNQCTYTFQYGDGSGTSGYYVSDLMHFAGIFEGTLTTNSSASVVFGCSILQTGDLTKSERAVDGIFGFGQQGMSVISQLSLQGIAPRVFSHCLKGDNSGGGVLVLGEIVEPNIVYSPLVQSQPHYNLNLQSISVNGQIVPIAPAVFATSNNRGTIVDSGTTLAYLAEEAYNPFVNAITALVPQSVRSVLSRGNQCYLITTSSNVDIFPQVSLNFAGGASLVLRPQDYLMQQNYIGEGSVWCIGFQRIPGQSITILGDLVLKDKIFVYDLAGQRIGWANYDCEYHLHYTEGT*

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