SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G27880 | AT | Annotation by Michelle Graham. TAIR10: Argonaute family protein | chr2:11871488-11876712 FORWARD LENGTH=997 | SoyBase | E_val: 0 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0048441 | GO-bp | Annotation by Michelle Graham. GO Biological Process: petal development | SoyBase | N/A | ISS |
| GO:0048443 | GO-bp | Annotation by Michelle Graham. GO Biological Process: stamen development | SoyBase | N/A | ISS |
| GO:0048481 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ovule development | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
| KOG1041 | KOG | Translation initiation factor 2C (eIF-2C) and related proteins | JGI | ISS | |
| PTHR22891 | Panther | EUKARYOTIC TRANSLATION INITIATION FACTOR 2C | JGI | ISS | |
| PF02170 | PFAM | PAZ domain | JGI | ISS | |
| PF02171 | PFAM | Piwi domain | JGI | ISS | |
| PF08699 | PFAM | Domain of unknown function (DUF1785) | JGI | ISS | |
| UniRef100_B9HQS2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Argonaute protein group n=1 Tax=Populus trichocarpa RepID=B9HQS2_POPTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233C455 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233C455 related cluster n=1 Tax=unknown RepID=UPI000233C455 | SoyBase | E_val: 0 | ISS |
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Glyma12g08860 not represented in the dataset |
Glyma12g08860 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma11g19650 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.12g083500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma12g08860.2 sequence type=transcript gene model=Glyma12g08860 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CGGCGGGTATGAAAAACTGCTTTACTGCTCTTCTTGTTCATGATATATTTTCCATCTTCACGAATGTTGTGTGTTTTATGTTTTCTTGTTTCAGGCTTGTGCTTCACTACAAGAAGGCTATTTACCCCGTGTTACTTTTGTGGTGGTCCAAAAACGACACCACACAAGGTTATTTCCTGTAGATCATGGAAGTCATGATCAGACAAATAAAAGTGGAAATATAATGCCAGGGACTGTCGTAGACACACACATATGCCACCCTCGGGAGTTTGATTTTTACCTCAACAGTCATGCTGGAATGCAAGGAACTAGTCGACCAACACATTATCATGTGCTGTTCGATGAAAACAACTTCACTGCTGACGGGTTGCAAATGTTTACTAATAATTTGTGTTATACGTATGCAAGGTGTACTCGATCAGTCTCAATAGTTCCACCTGTGTATTATGCACATTTGGCTGCCTTCAGGGCTCGCTGTTACATTGAAGTTGCAACATCAGATTCTGGTTCTGCAAGTGGAGGCCGGGCTGCTAACTGTGAGGTTAGATTGCCTTCGGTTAAGGAAAATGTGAAAGATGTGATGTTTTTCTGTTAAGCCTGTGAGATGCTTTTGTGAAGATGGGGGGATATTGATATGAGGTTATGTATGATTTTGGGCTTTATAGAGCTACTTTATAAACATTTTGCTATCTTTTTTTTTTTTTTTTAATTTGTTGCTGCTACATTCAAAGTTCAGTTAATATACAAAGTTCAGTTAGCTTTCGGTT
>Glyma12g08860.1 sequence type=CDS gene model=Glyma12g08860 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCTCCTCGCGGTGGCTCCAAGCAGCAACCAGATTCACGCCGTCAAGCGCCACCGTCCGCGGCGGCGGCGGTGCCTTCTCCTCCCGGAAGAGGACGCGGCCGTGGACGCGGAGAATCCTCCGTTCCCGCGCCTTCTCTGGTGAATGCACCATCTGCTCCTCCTCCGGCTTCCACCATCGGCGTTCCGTCCGGCGCCGCGCCTTTTCGTGCTGCGTTGCCACCTCCGGCGGTGGAATCTCTCACTTCCGCGGTCGAAAAGCAACTTACAATGCAACCTTCGGCGCCGTCGTCGTCGAAGGCGGTGAGGTTCAAGGAACGGCCAGGGTTCGGTCTTGCTGGGGAGAAAATCAAAGTTCGAGCGAATCATTTTCAAGTCCAAGTCGCCGAACAAGATCTATTTCATTATGACGTCTCTATCAATCCTGAGATTACTTCGAAGAAGGTTTCTAGAGATGTTATGACTTTGCTTGTGCAAGCGCATCGTGAAAAGATTCTCGGAAATCGCATACCAGCCTACGATGGGGGAAAGAGTCTTTTCACCGCTGGATCCTTGCCCTTCGAATCTAAGGATTTTGTGATCGTGCTAAAAGACGACGATGAACCAGGCTCGTCGTCTTCTTCCTCTCCTACTAGGAAAAAACGTGAACGCGAGTATAGAGTCACCATCAGGCTTGCTTCCAGAACTGACATTCACCACCTCAGTCAGTTTCTCAGGCGCCGTCAGTTGGATTGTCCTTATGAGACTATCCAGGCTCTTGATGTTGTTCTGCGTGCTACACCGTCTGAAAGGTTCGTTGTTGTGGGAAGATCGTTCTTCTCACCTTCTTTGGGGAAACCTGGATCGCTTGGTAGCGGAACGGAGTACTGGAGGGGCTATTACCAGAGCCTTCGCCCAACTCAGATGGGCCTGTCTCTTAACATTAATGTGTCGGCGAGGGCTTTTTATGAGCCTATTCCTGTGATTGATTTCATTGAAAGTCATTTTAGGGCCAATCCTTCCAGGCCTTTGCCTGATCAGGATCGAATCAAGCTTAAGAGAGTACTGAGAGGAGTGAAGGTAGAAGTGACTCATGGAAAGAATCTTAGACGTTACAAGATCACTGGAGTCACAAAAGAACAACTCAGAAAGTTAATGTTTACTCTTGATGACAATAGAACAAAAAGCTCAGTTGTTCAATATTTTCATGAGAAATACAATATTGTGTTGAAGCATACGCTTCTTCCTGCTCTTCAAGCTGGTAGTGACATTAAACCAATTTTTCTGCCTATGGAGCTTTGTCAAATTGTGGCTGGACAAAGATATACAAAGAGATTGAATGAGGAGCAAGTAACTAATCTTTTAAGGGCATCTTGTCAGCGTCCTCGTGATAGAGAAAACTCTATCAGACAGGTGGTGAGGCAAAGTAATTTCAGCACAGACAAATTTGTGAGTCACTTTGGAATTCAAGTGAGGGAGGATCCAGCATTGCTTGATGCTCGAGTTCTTCCTGCACCAATGCTAAAATATCATGACACAGGTAGAGAATCAAGTGTTGAACCCAAAATGGGCCAATGGAATATGATTGATAAGAAAATGTTTAATGCTGGTGTTGTGGAACATTGGACTTGCCTCAACTTTTCTGGAAAAATAAACAGAGAGTTTCCAAGTGCATTTTGTCATAAGTTGGCCAGAATGTGTAGTAACAAGGGCATGCGTTTTAATTCAAAGCCTTTACTGCCCATAACATCTGCTCAAAGTAGTCAAATAGAGAGTGCTCTTGTAAATTTGCATAAGCAGTCTATTACAAGACTAGCAAACCAAGGAAGACTCCAATTGTTGATCATAATTTTGCCAGATTTCGAGGGGTCCTATGAAAAAATAAAGCGTATTTGTGAAACTGAGCTAGGAATAGTGTCTCAGTGTTGTCAGCCGAGGCATGTTTGCCAGATGAAGCCACAATATCTTGAAAATGTGGCCCTCAAGATAAATGTGAAGGTTGGTGGCAGTAACACAGTATTGAATGATGCAATTGCTAGAATAATTCCTCGTGTGTCTGACAGACCTACATTAATCTTGGGTGCGGATGTAACACATCCACAGCCAGGGGAAGATTCTAGTCCTTCTATTGCTGCAGTAGTTGCATCTATGGATTGGCCTTATGTAACAAGGTACAGAGGAGTTGTTTCTGCTCAGACTCACCGTGAAGAAATCATCCAAGATCTTTATAATACATGTGAAGATCCTGTGAAGGGGAAGGTGCATTCGGGAATTATCAGGGAGTTACTTCGCGCTTTCCGTTTGTCTACTAATCAGAAGCCAGAGAGGATTATATTCTACAGGGATGGAGTAAGTGAGGGCCAATTCAGCCAGGTTTTGCTGTACGAGATGGATGCAATACGGCGGGCTTGTGCTTCACTACAAGAAGGCTATTTACCCCGTGTTACTTTTGTGGTGGTCCAAAAACGACACCACACAAGGTTATTTCCTGTAGATCATGGAAGTCATGATCAGACAAATAAAAGTGGAAATATAATGCCAGGGACTGTCGTAGACACACACATATGCCACCCTCGGGAGTTTGATTTTTACCTCAACAGTCATGCTGGAATGCAAGGAACTAGTCGACCAACACATTATCATGTGCTGTTCGATGAAAACAACTTCACTGCTGACGGGTTGCAAATGTTTACTAATAATTTGTGTTATACGTATGCAAGGTGTACTCGATCAGTCTCAATAGTTCCACCTGTGTATTATGCACATTTGGCTGCCTTCAGGGCTCGCTGTTACATTGAAGTTGCAACATCAGATTCTGGTTCTGCAAGTGGAGGCCGGGCTGCTAACTGTGAGGTTAGATTGCCTTCGGTTAAGGAAAATGTGAAAGATGTGATGTTTTTCTGTTAA >Glyma12g08860.2 sequence type=CDS gene model=Glyma12g08860 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCCAGGGACTGTCGTAGACACACACATATGCCACCCTCGGGAGTTTGATTTTTACCTCAACAGTCATGCTGGAATGCAAGGAACTAGTCGACCAACACATTATCATGTGCTGTTCGATGAAAACAACTTCACTGCTGACGGGTTGCAAATGTTTACTAATAATTTGTGTTATACGTATGCAAGGTGTACTCGATCAGTCTCAATAGTTCCACCTGTGTATTATGCACATTTGGCTGCCTTCAGGGCTCGCTGTTACATTGAAGTTGCAACATCAGATTCTGGTTCTGCAAGTGGAGGCCGGGCTGCTAACTGTGAGGTTAGATTGCCTTCGGTTAAGGAAAATGTGAAAGATGTGATGTTTTTCTGTTAA
>Glyma12g08860.1 sequence type=predicted peptide gene model=Glyma12g08860 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSPRGGSKQQPDSRRQAPPSAAAAVPSPPGRGRGRGRGESSVPAPSLVNAPSAPPPASTIGVPSGAAPFRAALPPPAVESLTSAVEKQLTMQPSAPSSSKAVRFKERPGFGLAGEKIKVRANHFQVQVAEQDLFHYDVSINPEITSKKVSRDVMTLLVQAHREKILGNRIPAYDGGKSLFTAGSLPFESKDFVIVLKDDDEPGSSSSSSPTRKKREREYRVTIRLASRTDIHHLSQFLRRRQLDCPYETIQALDVVLRATPSERFVVVGRSFFSPSLGKPGSLGSGTEYWRGYYQSLRPTQMGLSLNINVSARAFYEPIPVIDFIESHFRANPSRPLPDQDRIKLKRVLRGVKVEVTHGKNLRRYKITGVTKEQLRKLMFTLDDNRTKSSVVQYFHEKYNIVLKHTLLPALQAGSDIKPIFLPMELCQIVAGQRYTKRLNEEQVTNLLRASCQRPRDRENSIRQVVRQSNFSTDKFVSHFGIQVREDPALLDARVLPAPMLKYHDTGRESSVEPKMGQWNMIDKKMFNAGVVEHWTCLNFSGKINREFPSAFCHKLARMCSNKGMRFNSKPLLPITSAQSSQIESALVNLHKQSITRLANQGRLQLLIIILPDFEGSYEKIKRICETELGIVSQCCQPRHVCQMKPQYLENVALKINVKVGGSNTVLNDAIARIIPRVSDRPTLILGADVTHPQPGEDSSPSIAAVVASMDWPYVTRYRGVVSAQTHREEIIQDLYNTCEDPVKGKVHSGIIRELLRAFRLSTNQKPERIIFYRDGVSEGQFSQVLLYEMDAIRRACASLQEGYLPRVTFVVVQKRHHTRLFPVDHGSHDQTNKSGNIMPGTVVDTHICHPREFDFYLNSHAGMQGTSRPTHYHVLFDENNFTADGLQMFTNNLCYTYARCTRSVSIVPPVYYAHLAAFRARCYIEVATSDSGSASGGRAANCEVRLPSVKENVKDVMFFC* >Glyma12g08860.2 sequence type=predicted peptide gene model=Glyma12g08860 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MPGTVVDTHICHPREFDFYLNSHAGMQGTSRPTHYHVLFDENNFTADGLQMFTNNLCYTYARCTRSVSIVPPVYYAHLAAFRARCYIEVATSDSGSASGGRAANCEVRLPSVKENVKDVMFFC*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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