Glyma12g08840 - SoyBase

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Report for Sequence Feature Glyma12g08840

Feature Type:	gene_model
Chromosome:	Gm12
Start:	6586253
stop:	6603344
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g08840

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G08190	AT	Annotation by Michelle Graham. TAIR10: vacuolar protein sorting 41 \| chr1:2567652-2573142 FORWARD LENGTH=980	SoyBase	E_val: 0	ISS
GO:0006623	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to vacuole	SoyBase	N/A	ISS
GO:0006886	GO-bp	Annotation by Michelle Graham. GO Biological Process: intracellular protein transport	SoyBase	N/A	ISS
GO:0009630	GO-bp	Annotation by Michelle Graham. GO Biological Process: gravitropism	SoyBase	N/A	ISS
GO:0016192	GO-bp	Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG2066	KOG	Vacuolar assembly/sorting protein VPS41	JGI		ISS
PTHR12616	Panther	VACUOLAR PROTEIN SORTING VPS41	JGI		ISS
PF00400	PFAM	WD domain, G-beta repeat	JGI		ISS
PF00637	PFAM	Region in Clathrin and VPS	JGI		ISS
UniRef100_B9SCM9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Vacuolar protein sorting vps41, putative n=1 Tax=Ricinus communis RepID=B9SCM9_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1LRB0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LRB0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma12g08840

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g08840

Paralog	Evidence	Comments
Glyma11g19660	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g08840 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g083300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g08840

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma12g08840

Limit To All Plant Sequences

>Glyma12g08840.1   sequence type=CDS   gene model=Glyma12g08840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTCCGTTCCCGTCAGAGAACGGCGTTGAAGGAGACGACGAGAGAGAAGAGGAAGACGAAGAGGAAGAAGAAGAAGAGGAAGACGAAGAAGTGGTGGAAGATGAAGAAGACGAAGAGGAACCGAGGCTCAAGTACCAGAGAATGGGAGGTAGCATCCCTTCGCTGCTTGCGAGTGACGCGGCGTCGTGTATCGCCGTCGCGGAGCGCATGATCGCTCTCGGCACTCACGGCGGCACCGTTCACATCCTCGATTTTCTCGGGAATCAGGTTAAGGAATTCTCTGCACATGCTTCTGTTGTCAATGACCTTAGCTTTGACACAGAAGGTGAATATATTGGAAGCTGTTCTGATGATGGATCAGTTGTGATAAACAGTCTTTTCACTGATGAGAAATTGAAGTTTGAGTACCATCGGCCGATGAAGGCAGTTGCGTTGGATCCAGATTATGCAAGGAAAATGTCTAGGAGATTTGTTGCTGGTGGTTTGGCTGGTCATTTATATTTAAATTCAAAGAAATGGTTAGGATACCGTGATCAGGTTTTGCACTCTGGTGAAGGTTCAATACATGCTGTGAAATGGAGAGCAAGTCTTGTTGCTTGGGTTAATGATGCAGGAGTGAAGGTTTATGATACTGCCAATGACCAGCGTATTACATTTATTGAAAAACCACGGGGGAGCCCACGCCCTGAGCTTTTGCTTCCTCACCTGGTTTGGCAGGATGACAGCCTCTTAGTTATTGGCTGGGGAAAATCTGTCAAAATTGCTTCAATTAGGACAAATCACCAAAAAGCAGCCAATGGGTCATTCAGGCAAGTTCCTTTGACTGGTATGACCCAGGTGGATATTGTGGCATCTTTCCAAACCAGCTATTTCATTTCAGGACTTGCTCCCTTTGGTGATGCTTTGGTTGTTCTAGCATATATTCCTGGAGAAGAAGATGGAGATAAGGATTTTAGTAGCACCGCTCCTTTACGGCAGGGCAATGCACAAAGACCAGAAGTAAGAATAGTAACATGGAATAATGATGAGCTTTCTACAGATGCTCTTCCAGTACATGGGTTTGAGCATTACAGGGCGAAGGACTATTCTCTTGCTCATGCTCCCTTCTCAGGTAGCAGTTATGCTGGGGGTCAGTGGGCTGCAGGTGATGAACCACTTTACTATATTGTATCTCTGAAGGATGTAGTTATTGCCAAACCAAGGGATACTGAAGATCATATTGCATGGCTTCTTCAGCACGGGTGGCATGAAAAAGCTTTGGCTGTGGTTGAATCTGGCCAGGGACGGAGTGAACTACTTGATGAGGTGGGATCTAGGTACCTTGATCATTTGATTGTGGAAAGAAAATACAGGGAAGCAGCATCTTTGTGTCCCAAGTTGCTTCGAGGATCAGCTTCAGCATGGGAGAGATGGGTTTTCCACTTTGCACATCTTCGTCAGCTCCCTGTTTTAGTTCCTTACATGCCTACAGAAAACCCCAGACTACGTGATACTGCTTACGAGGTTGCTCTTGTTGCATTGGCTACAAATCCTTCTTTTCATAAGGATCTCTTGTCCACTGTAAAATCCTGGCCATCTGTAATTTATTCTGCTTTACCTGTAATTTCAGCCATTGAACCTCAGCTAAATACTTCATCCATGACTGATTCACTTAAGGAGGCATTAGCAGAGTTGTATGTAATCGATGGGCAATTTGAGAAAGCCTTCTTGTTGTATGCTGATCTTTTGAAGCCAGAAGTATTTGATTTTATTGATAAACATAACCTACACGATGCTATTCGTGGAAAGGTTGTCCAACTAATGAGGCTAGATTGCAAGCGCGCTGTTCCTTTGTTAATCCAGAATAGGGACTTAATAAGTCCACCTGAAGTTGTGAATCAACTTCTAAATGCAGATGATAAGAGTGATTGTAGATATTTTTTACATTTATATCTCCACTCATTATTTGAAGTAAATCCTCATGCTGGGAAAGACTTCCATGATATGCAGGTAGAACTCTATGCGGACTATGATCCAAAGATGCTGCTACCTTTTCTCCGTAGCAGTCAACACTACACCCTTGAGAAGGCTTACGAAATTTGCATTAAAAGAGACCTATTGAGGGAGCAAGTCTTCATCCTAGGAAGGATGGGAAACTCGAAACAAGCCCTAGCTGTTATTATAAACAAATTGGGGGATATAGAGGAGGCCGTAGAGTTTGTCACCATGCAGCATGATGATGAACTTTGGGAAGAATTAATCAAGCAATGCCTTCACAAACCTGAAATGGTGGGCATATTATTGGAGCACACAGTTGGAAATCTTGATCCCCTTTACATTGTAAATAAGGTTCCTAATGGGTTGGAAATCCCTCGGCTCCGGGATCGGCTGGTTAAGATTATCACCGACTACAGGACTGAAACATCGCTCAGACATGGATGCAATGATATCATTAAGGCGGACTGTGTCAATCTTTTAATTAAGTATTACAAAGAGGCAAGGCATGGGATTTCTTTAGGTAATGAAGATGAGCCGCGGGTTAAAATGAGTGATACTCGTGCTTCTCAGGTATTTGACAAATCTCCAAGTCTGAGAACTGTGGAGTTGAAGTCAAAGACTAGGGGAGGTGGAAGATGTTGTATATGTTTCGATCCATTTTCTATACAGAATGTATCGGTCATTGTTTTCTTTTGCTGTCATGGTTATCACACAACTTGTCTCATGGATTCGTCTTACACTAGTAGTAACCAGAAAGAGGTCCAAGCCACGTCCCTAGAGGCGGAAACGTATGATGGTTACAATGGTTATGAGGAAGATGCTAGTGAGGATGATGAAGAAGCCAAGTCTGGTGGTCCTCGTATGCGTTGTATATTGTGTACTACTGCTGGCTAG

Predicted protein sequences of Glyma12g08840

Limit To All Plant Sequences

>Glyma12g08840.1   sequence type=predicted peptide   gene model=Glyma12g08840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVPFPSENGVEGDDEREEEDEEEEEEEEDEEVVEDEEDEEEPRLKYQRMGGSIPSLLASDAASCIAVAERMIALGTHGGTVHILDFLGNQVKEFSAHASVVNDLSFDTEGEYIGSCSDDGSVVINSLFTDEKLKFEYHRPMKAVALDPDYARKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGSIHAVKWRASLVAWVNDAGVKVYDTANDQRITFIEKPRGSPRPELLLPHLVWQDDSLLVIGWGKSVKIASIRTNHQKAANGSFRQVPLTGMTQVDIVASFQTSYFISGLAPFGDALVVLAYIPGEEDGDKDFSSTAPLRQGNAQRPEVRIVTWNNDELSTDALPVHGFEHYRAKDYSLAHAPFSGSSYAGGQWAAGDEPLYYIVSLKDVVIAKPRDTEDHIAWLLQHGWHEKALAVVESGQGRSELLDEVGSRYLDHLIVERKYREAASLCPKLLRGSASAWERWVFHFAHLRQLPVLVPYMPTENPRLRDTAYEVALVALATNPSFHKDLLSTVKSWPSVIYSALPVISAIEPQLNTSSMTDSLKEALAELYVIDGQFEKAFLLYADLLKPEVFDFIDKHNLHDAIRGKVVQLMRLDCKRAVPLLIQNRDLISPPEVVNQLLNADDKSDCRYFLHLYLHSLFEVNPHAGKDFHDMQVELYADYDPKMLLPFLRSSQHYTLEKAYEICIKRDLLREQVFILGRMGNSKQALAVIINKLGDIEEAVEFVTMQHDDELWEELIKQCLHKPEMVGILLEHTVGNLDPLYIVNKVPNGLEIPRLRDRLVKIITDYRTETSLRHGCNDIIKADCVNLLIKYYKEARHGISLGNEDEPRVKMSDTRASQVFDKSPSLRTVELKSKTRGGGRCCICFDPFSIQNVSVIVFFCCHGYHTTCLMDSSYTSSNQKEVQATSLEAETYDGYNGYEEDASEDDEEAKSGGPRMRCILCTTAG*

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