Glyma12g08820 - SoyBase

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Report for Sequence Feature Glyma12g08820

Feature Type:	gene_model
Chromosome:	Gm12
Start:	6555381
stop:	6561114
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g08820

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G27920	AT	Annotation by Michelle Graham. TAIR10: serine carboxypeptidase-like 51 \| chr2:11885777-11889043 REVERSE LENGTH=461	SoyBase	E_val: 0	ISS
GO:0006508	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteolysis	SoyBase	N/A	ISS
GO:0009627	GO-bp	Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance	SoyBase	N/A	ISS
GO:0034976	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to endoplasmic reticulum stress	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0004185	GO-mf	Annotation by Michelle Graham. GO Molecular Function: serine-type carboxypeptidase activity	SoyBase	N/A	ISS
KOG1283	KOG	Serine carboxypeptidases	JGI		ISS
PTHR11802	Panther	SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE	JGI		ISS
PTHR11802:SF3	Panther	RETINOID-INDUCIBLE SERINE CARBOXYPEPTIDASE (SERINE CARBOXYPEPTIDASE 1)	JGI		ISS
PF00450	PFAM	Serine carboxypeptidase	JGI		ISS
UniRef100_B9SCM6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Retinoid-inducible serine carboxypeptidase, putative n=1 Tax=Ricinus communis RepID=B9SCM6_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1LRA7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LRA7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma12g08820

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g08820

Paralog	Evidence	Comments
Glyma11g19680	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g08820 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g083100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g08820

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma12g08820

Limit To All Plant Sequences

>Glyma12g08820.1   sequence type=CDS   gene model=Glyma12g08820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGAAAAAGGTCCCCTTTTTTTTCTCCATTCTCTTATTCATTGCTCTGCTATTTCATGGAGGAAAGGTGTTAGCTTTGAATTGCCAAGACGGATCAGAGGAATGGGGATACGTTCAAGTCAGACCCAAAGCGCACATGTTTTGGTGGCTTTATAAAAGTCCATATAGAGTGGAAGATCCTTCTAAGCCGTGGCCAATTGTTCTCTGGTTGCAAGGAGGACCTGGTGCTTCAGGAGTAGGGATTGGAAATTTTGAGGAGATTGGGCCTTTGGACAGAAGCTTGAAGCCGCGGAATTCCACATGGTTGAGAAAAGCAGATCTCTTGTTTGTGGACAATCCAGTTGGAACCGGGTACAGTTTTGTGGAGGATAAGAAACTCTTTGTGAAAACAGATGATGAGGCAGCCACCGACTTGACTACATTGTTGATTGAATTATTCAGTGGGGATGAGAAACTGCAAAAGAGTCCTCTGTTCATTGTGGCAGAGTCATATGGTGGCAAATTTGCTGTCACTGCTGGGTTATCTGCTCTGAAAGCTATAGAAGATGGGAAATTGAAGCTTAGACTTGGAGGTGTGGCATTAGGAGACAGTTGGATCTCCCCTGAAGATTTTGTGTTCTCATGGGGTCCTCTCCTTAAAGACCTCTCACGACTTGACGATAATGGACTGCAAAAATCAAACAGTATAGCTGAGAGGATCAAGCAGCAAATTGAGGACGGTAAATTTGTTGAAGCCACCGACTCATGGGGTGAACTTGAGAATGTGATTGCTACCAGCAGCAACAATGTGGACTTCTACAATTTATTGGAGGATGCGGGAGGTGATGACATAGCAGCAATGGAGTTAGGGTCATATGAGAAATTATCAATGGAGAAGTACTCCAGATATCTTACTTCCATGAGGTCAAGGTCATCATCTCCTGGTGGTGATGATGATCTTGACAAGTTACTAAACGGTGTCATAAAGAAAAAGTTAAAGATCATCCCTGAGAATGTCACATGGGGAGGGCAGTCTGGTGATGTTTTCAACTATCTTGCAGGTGATTTTATGAGACCAAGAATTAATGAGGTTGATGAACTGCTGACAAAAGGGGTCAATGTTACTGTGTACAATGGACAAGTCGATCTGATTTGTTCAACCAAGGGGACTGAAGCTTGGGTTCATAAACTAAAGTGGGAAGGGCTTAAAATTTTCTTGGCGAAAGATAGAACACCTCTCTACTGCGGAAGTGACAAATCTACAACCAAAGGCTTTGTTAAGTCATATAAAAACCTATACTTCTATTGGATCCTCAAAGCTGGCCATTTTGTACCCACTGATCAGCCATGCGTGGCACTAGACATGGTGGGTGCAATTACACAGTCACCAGCTACTTGA

Predicted protein sequences of Glyma12g08820

Limit To All Plant Sequences

>Glyma12g08820.1   sequence type=predicted peptide   gene model=Glyma12g08820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEKKVPFFFSILLFIALLFHGGKVLALNCQDGSEEWGYVQVRPKAHMFWWLYKSPYRVEDPSKPWPIVLWLQGGPGASGVGIGNFEEIGPLDRSLKPRNSTWLRKADLLFVDNPVGTGYSFVEDKKLFVKTDDEAATDLTTLLIELFSGDEKLQKSPLFIVAESYGGKFAVTAGLSALKAIEDGKLKLRLGGVALGDSWISPEDFVFSWGPLLKDLSRLDDNGLQKSNSIAERIKQQIEDGKFVEATDSWGELENVIATSSNNVDFYNLLEDAGGDDIAAMELGSYEKLSMEKYSRYLTSMRSRSSSPGGDDDLDKLLNGVIKKKLKIIPENVTWGGQSGDVFNYLAGDFMRPRINEVDELLTKGVNVTVYNGQVDLICSTKGTEAWVHKLKWEGLKIFLAKDRTPLYCGSDKSTTKGFVKSYKNLYFYWILKAGHFVPTDQPCVALDMVGAITQSPAT*

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