Glyma12g08740 - SoyBase

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Report for Sequence Feature Glyma12g08740

Feature Type:	gene_model
Chromosome:	Gm12
Start:	6474104
stop:	6479488
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g08740

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G44880	AT	Annotation by Michelle Graham. TAIR10: Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain \| chr3:16383858-16386204 FORWARD LENGTH=537	SoyBase	E_val: 0	ISS
GO:0008219	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell death	SoyBase	N/A	ISS
GO:0009793	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy	SoyBase	N/A	ISS
GO:0009816	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to bacterium, incompatible interaction	SoyBase	N/A	ISS
GO:0009908	GO-bp	Annotation by Michelle Graham. GO Biological Process: flower development	SoyBase	N/A	ISS
GO:0009965	GO-bp	Annotation by Michelle Graham. GO Biological Process: leaf morphogenesis	SoyBase	N/A	ISS
GO:0010027	GO-bp	Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization	SoyBase	N/A	ISS
GO:0010154	GO-bp	Annotation by Michelle Graham. GO Biological Process: fruit development	SoyBase	N/A	ISS
GO:0010228	GO-bp	Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem	SoyBase	N/A	ISS
GO:0015996	GO-bp	Annotation by Michelle Graham. GO Biological Process: chlorophyll catabolic process	SoyBase	N/A	ISS
GO:0016226	GO-bp	Annotation by Michelle Graham. GO Biological Process: iron-sulfur cluster assembly	SoyBase	N/A	ISS
GO:0030154	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell differentiation	SoyBase	N/A	ISS
GO:0045893	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0048481	GO-bp	Annotation by Michelle Graham. GO Biological Process: ovule development	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009534	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid	SoyBase	N/A	ISS
GO:0009706	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast inner membrane	SoyBase	N/A	ISS
GO:0009941	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope	SoyBase	N/A	ISS
GO:0010277	GO-mf	Annotation by Michelle Graham. GO Molecular Function: chlorophyllide a oxygenase [overall] activity	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
GO:0032441	GO-mf	Annotation by Michelle Graham. GO Molecular Function: pheophorbide a oxygenase activity	SoyBase	N/A	ISS
GO:0051536	GO-mf	Annotation by Michelle Graham. GO Molecular Function: iron-sulfur cluster binding	SoyBase	N/A	ISS
GO:0051537	GO-mf	Annotation by Michelle Graham. GO Molecular Function: 2 iron, 2 sulfur cluster binding	SoyBase	N/A	ISS
PTHR21266	Panther	IRON-SULFUR DOMAIN CONTAINING PROTEIN	JGI		ISS
PTHR21266:SF3	Panther	PHEOPHORBIDE A OXYGENASE	JGI		ISS
PF00355	PFAM	Rieske [2Fe-2S] domain	JGI		ISS
PF08417	PFAM	Pheophorbide a oxygenase	JGI		ISS
UniRef100_Q0H950	UniRef	Annotation by Michelle Graham. Best UniRef hit: Lethal leaf spot 1-like protein n=1 Tax=Glycine max RepID=Q0H950_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q0H950	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Lethal leaf spot 1-like protein n=1 Tax=Glycine max RepID=Q0H950_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma12g08740

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g08740

Paralog	Evidence	Comments
Glyma11g19800	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g08740 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g082100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g08740

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma12g08740

Limit To All Plant Sequences

>Glyma12g08740.2   sequence type=transcript   gene model=Glyma12g08740   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGACATCCCTCGTTCCACCGATCTAATTTCTTTCTTTTTTTCCGGCAGAAAAAAAGGAAGAAATTCTGTCAAAATATTCAGAGACAAACATTATAGCAAACATTGACTAACAAAATTTTCACCCCAATAGTTTTTCCTAAAATTAGCATTTAGCACCGCAGCAATTAATCATTAATCATTAATCAAAGTAAGAAAATAAAAGGTGGGAGAGAATGACACTTCTGAACAGTATTTTGTCTGAAACTGAATAGAGCAGAAGAAAGAAACACTTGAAACTTGCACGACTCAACTACAATCGCGTTCGATTTCTCTTATTATGAACCTCTCTCTATGCAATTCTTCAAACCTTAACACCTCAAGAAAACCATTGATGGCACTCCCTCACTCCATCTCTGCCTTAGCCACCACACTCACACTCTCCTCGCCAACAACCAAACCCCAGAAAGTTAACCCCTTTCCCTTTTTCTCGAACCAAAAGACACGATTTTTAACGAAACAAACGCGACCCAGAAGCAGAAGAAGCCTCTCCCTAACCCCTGCACGCGTTGCGGCGCCACCCTCAACTGTTGAAGCCGATCAATCATACCCGGAGACCGAAAATAACGAAACTGAGGAAGAGTTTAACGATGAAAGCTCTTATTCTAAATTCACTTGGAGGGATCACTGGTACCCTGTTTCGTTGATCGAAGATCTGAACCCTCTCTTGCCCACACCGTTTCAGCTTCTGGGTCGTGAAATCGTGCTCTGGTACGACAAGTCCATTTCCCAATGGGTTGCTTTTGATGACAAATGCCCCCATCGTCTTGCCCCTTTGTCTGAAGGGAGGATTGATGAAGATGGGAAGTTGCAGTGTTCTTATCATGGGTGGTCTTTTGATGGGTGTGGATCTTGTGTTAAGATACCTCAGGCTGCATCTGAAGGCCCCGAAGCACGTGCTATTGGATCTCCTAAAGCGTGTGCCACTAGGTTCCCTACCATGGTGTCTCAGGGCTTGCTCTTCGTTTGGCCTGATGAGAATGGTTGGGAGAAAGCAAAGGCCTCCAAGCCTCCAATGTTGCCTGATGACTTTGACAAACCGGAGTTTGCCACGGTCAACATTCAGCGTGATCTGTTCTATGGTTACGATACTCTCATGGAGAATGTCTCTGATCCTTCTCACATTGAGTTTGCTCATCACAAGGTCACAGGAAGGAGAGACAGAGCCAAGCCTCTGCCATTCAAGATGGATTCTCGTGGTTCATGGGGCTTCTCTGGAGCTAATGAAGGGAACCCACAGATCAGTGCCAAGTTTGTTGCACCATGTTATATGATGAACAAGATTCAGATTGATACCAAACTCCCTGTAGTTGGTGACCAGAAATGGGTAGTATGGATATGTTCCTTCAATGTCCCCATGGCACCCGGTAAGACTCGCTCCATAGTTTGCAGTGCTCGAAACTTCTTCCAGTTCTCAGTGCCAGGGCCAGCCTGGTGGCAAGTCGTTCCTAGATGGTATGAGCATTGGACTTCAAACAAGGTATATGATGGAGACATGATTGTTCTTCAAGGCCAAGAGAAAATCTTCCTTTCAGAAACCAAGGAAGGTGGAGACATTAACAAACAGTATACAAACATCACCTTCACACCAACACAGGCAGATCGCTTTGTCTTGGCATTTCGAAACTGGCTAAGGCGGCATGGCAATGGCCAACCAGAATGGTTTGGCAACAGCAGCGACCAACCATTGCCATCAACTGTTTTATCAAAACGTCAGGTACAATAACATGATTCATGATTTTCATTTTGAAGCCCCTTAATTTGAACAACGAAGAATGTTAACAATACACACTTTCTAACTCTTTTTTATCGATTAAAATTCACTTAAGACATACAATGAATAAGTTGTGTGCTTATTCTTACCCAACAATTAAGAGTTTTCTGGTATCATTTCGCTGTGCTAACCAAGAACTAAATGAAGCATTTTATTTATGTTTGTGTAGATGTTGGATAGATTTGAACAGCACACTCTCAAGTGTTCATCATGTAAAGCAGCATATGAGGGATTCCAAACATGGCAGAAAGTCCTAATTGGTACAACAGTTGTGTTTTGTGCAACATCAGGGATCCCATCAGATGTCCAGTTGCGTGTACTTTTGGCTGGACTCGCAATTGTCAGTGCAGCCATAACTTTTGCCCTAAATCAACTCCAAAAGAATTTTGAATTCGTGGATTACGTGCATGCCGAAATTGATTAAACACTTCCCTCCAAAGGAACTTCTACTAGTTAGTTGTAAATAGAGTTGAAGACAAAAATACATGTATACTAGTATTTTGATGAAAGAGCTCAAATCTTCCTATCCTTGGTGTTACTAGTATTTTGATGAAAAGAGCAACAAAGTTGATCGTGAGATATCCTTTTTGAATAAAAATTTAATCAAAGTATTACAATTGAGGGGTGGCTACATGAAACAGTTGGGCCCGTGAAGGATAAGTTTGGTCTGTGAAATAAATTAATTTTTTTTTCAAGTTCTGTATTCAGTCCACAAAAATTTGTAGATAAATGGAGTTCCGTATCCAGTCCGCAAAAATTGTTTTTGATTATGTGAATGTATGAATATATGATTT

Coding sequences of Glyma12g08740

Limit To All Plant Sequences

>Glyma12g08740.1   sequence type=CDS   gene model=Glyma12g08740   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACCTCTCTCTATGCAATTCTTCAAACCTTAACACCTCAAGAAAACCATTGATGGCACTCCCTCACTCCATCTCTGCCTTAGCCACCACACTCACACTCTCCTCGCCAACAACCAAACCCCAGAAAGTTAACCCCTTTCCCTTTTTCTCGAACCAAAAGACACGATTTTTAACGAAACAAACGCGACCCAGAAGCAGAAGAAGCCTCTCCCTAACCCCTGCACGCGTTGCGGCGCCACCCTCAACTGTTGAAGCCGATCAATCATACCCGGAGACCGAAAATAACGAAACTGAGGAAGAGTTTAACGATGAAAGCTCTTATTCTAAATTCACTTGGAGGGATCACTGGTACCCTGTTTCGTTGATCGAAGATCTGAACCCTCTCTTGCCCACACCGTTTCAGCTTCTGGGTCGTGAAATCGTGCTCTGGTACGACAAGTCCATTTCCCAATGGGTTGCTTTTGATGACAAATGCCCCCATCGTCTTGCCCCTTTGTCTGAAGGGAGGATTGATGAAGATGGGAAGTTGCAGTGTTCTTATCATGGGTGGTCTTTTGATGGGTGTGGATCTTGTGTTAAGATACCTCAGGCTGCATCTGAAGGCCCCGAAGCACGTGCTATTGGATCTCCTAAAGCGTGTGCCACTAGGTTCCCTACCATGGTGTCTCAGGGCTTGCTCTTCGTTTGGCCTGATGAGAATGGTTGGGAGAAAGCAAAGGCCTCCAAGCCTCCAATGTTGCCTGATGACTTTGACAAACCGGAGTTTGCCACGGTCAACATTCAGCGTGATCTGTTCTATGGTTACGATACTCTCATGGAGAATGTCTCTGATCCTTCTCACATTGAGTTTGCTCATCACAAGGTCACAGGAAGGAGAGACAGAGCCAAGCCTCTGCCATTCAAGATGGATTCTCGTGGTTCATGGGGCTTCTCTGGAGCTAATGAAGGGAACCCACAGATCAGTGCCAAGTTTGTTGCACCATGTTATATGATGAACAAGATTCAGATTGATACCAAACTCCCTGTAGTTGGTGACCAGAAATGGGTAGTATGGATATGTTCCTTCAATGTCCCCATGGCACCCGGTAAGACTCGCTCCATAGTTTGCAGTGCTCGAAACTTCTTCCAGTTCTCAGTGCCAGGGCCAGCCTGGTGGCAAGTCGTTCCTAGATGGTATGAGCATTGGACTTCAAACAAGGTATATGATGGAGACATGATTGTTCTTCAAGGCCAAGAGAAAATCTTCCTTTCAGAAACCAAGGAAGGTGGAGACATTAACAAACAGTATACAAACATCACCTTCACACCAACACAGGCAGATCGCTTTGTCTTGGCATTTCGAAACTGGCTAAGGCGGCATGGCAATGGCCAACCAGAATGGTTTGGCAACAGCAGCGACCAACCATTGCCATCAACTGTTTTATCAAAACGTCAGATGTTGGATAGATTTGAACAGCACACTCTCAAGTGTTCATCATGTAAAGCAGCATATGAGGGATTCCAAACATGGCAGAAAGTCCTAATTGGTACAACAGTTGTGTTTTGTGCAACATCAGGGATCCCATCAGATGTCCAGTTGCGTGTACTTTTGGCTGGACTCGCAATTGTCAGTGCAGCCATAACTTTTGCCCTAAATCAACTCCAAAAGAATTTTGAATTCGTGGATTACGTGCATGCCGAAATTGATTAA

>Glyma12g08740.2   sequence type=CDS   gene model=Glyma12g08740   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACCTCTCTCTATGCAATTCTTCAAACCTTAACACCTCAAGAAAACCATTGATGGCACTCCCTCACTCCATCTCTGCCTTAGCCACCACACTCACACTCTCCTCGCCAACAACCAAACCCCAGAAAGTTAACCCCTTTCCCTTTTTCTCGAACCAAAAGACACGATTTTTAACGAAACAAACGCGACCCAGAAGCAGAAGAAGCCTCTCCCTAACCCCTGCACGCGTTGCGGCGCCACCCTCAACTGTTGAAGCCGATCAATCATACCCGGAGACCGAAAATAACGAAACTGAGGAAGAGTTTAACGATGAAAGCTCTTATTCTAAATTCACTTGGAGGGATCACTGGTACCCTGTTTCGTTGATCGAAGATCTGAACCCTCTCTTGCCCACACCGTTTCAGCTTCTGGGTCGTGAAATCGTGCTCTGGTACGACAAGTCCATTTCCCAATGGGTTGCTTTTGATGACAAATGCCCCCATCGTCTTGCCCCTTTGTCTGAAGGGAGGATTGATGAAGATGGGAAGTTGCAGTGTTCTTATCATGGGTGGTCTTTTGATGGGTGTGGATCTTGTGTTAAGATACCTCAGGCTGCATCTGAAGGCCCCGAAGCACGTGCTATTGGATCTCCTAAAGCGTGTGCCACTAGGTTCCCTACCATGGTGTCTCAGGGCTTGCTCTTCGTTTGGCCTGATGAGAATGGTTGGGAGAAAGCAAAGGCCTCCAAGCCTCCAATGTTGCCTGATGACTTTGACAAACCGGAGTTTGCCACGGTCAACATTCAGCGTGATCTGTTCTATGGTTACGATACTCTCATGGAGAATGTCTCTGATCCTTCTCACATTGAGTTTGCTCATCACAAGGTCACAGGAAGGAGAGACAGAGCCAAGCCTCTGCCATTCAAGATGGATTCTCGTGGTTCATGGGGCTTCTCTGGAGCTAATGAAGGGAACCCACAGATCAGTGCCAAGTTTGTTGCACCATGTTATATGATGAACAAGATTCAGATTGATACCAAACTCCCTGTAGTTGGTGACCAGAAATGGGTAGTATGGATATGTTCCTTCAATGTCCCCATGGCACCCGGTAAGACTCGCTCCATAGTTTGCAGTGCTCGAAACTTCTTCCAGTTCTCAGTGCCAGGGCCAGCCTGGTGGCAAGTCGTTCCTAGATGGTATGAGCATTGGACTTCAAACAAGGTATATGATGGAGACATGATTGTTCTTCAAGGCCAAGAGAAAATCTTCCTTTCAGAAACCAAGGAAGGTGGAGACATTAACAAACAGTATACAAACATCACCTTCACACCAACACAGGCAGATCGCTTTGTCTTGGCATTTCGAAACTGGCTAAGGCGGCATGGCAATGGCCAACCAGAATGGTTTGGCAACAGCAGCGACCAACCATTGCCATCAACTGTTTTATCAAAACGTCAGGTACAATAA

Predicted protein sequences of Glyma12g08740

Limit To All Plant Sequences

>Glyma12g08740.1   sequence type=predicted peptide   gene model=Glyma12g08740   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNLSLCNSSNLNTSRKPLMALPHSISALATTLTLSSPTTKPQKVNPFPFFSNQKTRFLTKQTRPRSRRSLSLTPARVAAPPSTVEADQSYPETENNETEEEFNDESSYSKFTWRDHWYPVSLIEDLNPLLPTPFQLLGREIVLWYDKSISQWVAFDDKCPHRLAPLSEGRIDEDGKLQCSYHGWSFDGCGSCVKIPQAASEGPEARAIGSPKACATRFPTMVSQGLLFVWPDENGWEKAKASKPPMLPDDFDKPEFATVNIQRDLFYGYDTLMENVSDPSHIEFAHHKVTGRRDRAKPLPFKMDSRGSWGFSGANEGNPQISAKFVAPCYMMNKIQIDTKLPVVGDQKWVVWICSFNVPMAPGKTRSIVCSARNFFQFSVPGPAWWQVVPRWYEHWTSNKVYDGDMIVLQGQEKIFLSETKEGGDINKQYTNITFTPTQADRFVLAFRNWLRRHGNGQPEWFGNSSDQPLPSTVLSKRQMLDRFEQHTLKCSSCKAAYEGFQTWQKVLIGTTVVFCATSGIPSDVQLRVLLAGLAIVSAAITFALNQLQKNFEFVDYVHAEID*

>Glyma12g08740.2   sequence type=predicted peptide   gene model=Glyma12g08740   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNLSLCNSSNLNTSRKPLMALPHSISALATTLTLSSPTTKPQKVNPFPFFSNQKTRFLTKQTRPRSRRSLSLTPARVAAPPSTVEADQSYPETENNETEEEFNDESSYSKFTWRDHWYPVSLIEDLNPLLPTPFQLLGREIVLWYDKSISQWVAFDDKCPHRLAPLSEGRIDEDGKLQCSYHGWSFDGCGSCVKIPQAASEGPEARAIGSPKACATRFPTMVSQGLLFVWPDENGWEKAKASKPPMLPDDFDKPEFATVNIQRDLFYGYDTLMENVSDPSHIEFAHHKVTGRRDRAKPLPFKMDSRGSWGFSGANEGNPQISAKFVAPCYMMNKIQIDTKLPVVGDQKWVVWICSFNVPMAPGKTRSIVCSARNFFQFSVPGPAWWQVVPRWYEHWTSNKVYDGDMIVLQGQEKIFLSETKEGGDINKQYTNITFTPTQADRFVLAFRNWLRRHGNGQPEWFGNSSDQPLPSTVLSKRQVQ*

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