SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G22890 | AT | Annotation by Michelle Graham. TAIR10: C2H2 and C2HC zinc fingers superfamily protein | chr5:7653541-7654662 REVERSE LENGTH=373 | SoyBase | E_val: 4.00E-102 | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0006826 | GO-bp | Annotation by Michelle Graham. GO Biological Process: iron ion transport | SoyBase | N/A | ISS |
| GO:0010106 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular response to iron ion starvation | SoyBase | N/A | ISS |
| GO:0010167 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to nitrate | SoyBase | N/A | ISS |
| GO:0010200 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to chitin | SoyBase | N/A | ISS |
| GO:0015706 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nitrate transport | SoyBase | N/A | ISS |
| GO:0005622 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: intracellular | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| PTHR11389 | Panther | ZINC FINGER PROTEIN | JGI | ISS | |
| PF00096 | PFAM | Zinc finger, C2H2 type | JGI | ISS | |
| UniRef100_I1LR96 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1LR96_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q0WT24 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: C2H2 and C2HC zinc finger-containing protein n=2 Tax=Arabidopsis thaliana RepID=Q0WT24_ARATH | SoyBase | E_val: 2.00E-99 | ISS |
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Glyma12g08680 not represented in the dataset |
Glyma12g08680 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma11g19810 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.12g081700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma12g08680.2 sequence type=CDS gene model=Glyma12g08680 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATCATTTTATTCAAAGCCAATCTTCACACAGAAAACTTAGATATATAGCTTACAAGTTTAGTATTGGAGGAGGATTTTCAATTTCAACAATGATGCCAATTAATGAGGCCACAATATCTAGCTCCACAAATGATTTTCAAGAACTGCACATGTTTCCTGTGGCAATGAATGAATATTTGGTTTCACCTTCTCTTGAAGCAAGCTCTTCCTCAGCTTCACACTCTTCAAACTCTCTCCTCTTCCACCTCTTACTTCTCAAGGACAAGCTAGGTCAACTCCAAAACCTAGTTGATGTTCTTGTCTCCCCTCAACAAAACCTACCCGAGTCAACTCCAACGGCAATCTCCACAATCAACAACGCAATCCAAGAAATCATAATGGCAGCCACTTCAATGAGATTCACCTGCCAACAAATGATTCCTAGTTCCTCTTCAGGTACTAATACTACTAATGAATTGCAGCAGAAACAAATTGATCATGGTAGATTATTACCACCACATCATGAATCAAACTTTGTACACAACAATAGGGGTGTGGCTAGTAACAACATTAACATAGTCTCAGATATAAATAGAGGGCAAAGTTTCTTATTATCATCTAGTATTGAGGGAGAGGCATTGGATTGGTTTGCTGAAAGCTACAATAATAATAGAAATAGTGGTAATTATTGTAACCCTAAAGATGATGAAGCAGCCAACATTATTAGCAACATCATGGGGGAGATGAGTGACATAATTGAATTGGATGCTGCGGATTTGTTGGCAAAGTACTCATATTTTTGCCAAGTGTGTGGGAAAGGGTTTAAGCGTGACGCCAATTTGAGGATGCACATGAGAGCTCATGGGGAAGAGTACAAAACAAGTTCAGCCTTGTGCAACCCAATGAAAAACAACAAGGAGAACAGTAATTTGTTGTTATTAGGTGCAGAAGAAGGAAGTGGTGCCACAAAGAGATACTCGTGCCCTCAACAAGGGTGTAGGTGGAACCAAAGGCATGCCAAGTTTCAACCCTTGAAGTCAATGATTTGTGCCAAGAACCATTACAAGAGGAGCCACTGCCCGAAGATGTACGTGTGCAATAGGTGCAACCAGAAACATTTCTCGGTGATTTCTGATTTGAGGACACACGAGAAGCACTGTGGGGACCCCAAGTGGCTGTGCTCGTGTGGCACTACGTTTTCAAGGAAGGACAAGCTTATGGGCCATGTTGCTTTGTTCGTAGGGCACACCCCAGTTACTAGTGGCTTGTCATCATACTCAGGAAAATCAGAACAACTGTAA
>Glyma12g08680.2 sequence type=predicted peptide gene model=Glyma12g08680 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDHFIQSQSSHRKLRYIAYKFSIGGGFSISTMMPINEATISSSTNDFQELHMFPVAMNEYLVSPSLEASSSSASHSSNSLLFHLLLLKDKLGQLQNLVDVLVSPQQNLPESTPTAISTINNAIQEIIMAATSMRFTCQQMIPSSSSGTNTTNELQQKQIDHGRLLPPHHESNFVHNNRGVASNNINIVSDINRGQSFLLSSSIEGEALDWFAESYNNNRNSGNYCNPKDDEAANIISNIMGEMSDIIELDAADLLAKYSYFCQVCGKGFKRDANLRMHMRAHGEEYKTSSALCNPMKNNKENSNLLLLGAEEGSGATKRYSCPQQGCRWNQRHAKFQPLKSMICAKNHYKRSHCPKMYVCNRCNQKHFSVISDLRTHEKHCGDPKWLCSCGTTFSRKDKLMGHVALFVGHTPVTSGLSSYSGKSEQL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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