Glyma12g08470 - SoyBase

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Report for Sequence Feature Glyma12g08470

Feature Type:	gene_model
Chromosome:	Gm12
Start:	6212743
stop:	6217594
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g08470

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G08110	AT	Annotation by Michelle Graham. TAIR10: lactoylglutathione lyase family protein / glyoxalase I family protein \| chr1:2535463-2537630 FORWARD LENGTH=235	SoyBase	E_val: 3.00E-110	ISS
GO:0005975	GO-bp	Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process	SoyBase	N/A	ISS
GO:0006094	GO-bp	Annotation by Michelle Graham. GO Biological Process: gluconeogenesis	SoyBase	N/A	ISS
GO:0006096	GO-bp	Annotation by Michelle Graham. GO Biological Process: glycolysis	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0046686	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cadmium ion	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0004462	GO-mf	Annotation by Michelle Graham. GO Molecular Function: lactoylglutathione lyase activity	SoyBase	N/A	ISS
GO:0005516	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calmodulin binding	SoyBase	N/A	ISS
GO:0046872	GO-mf	Annotation by Michelle Graham. GO Molecular Function: metal ion binding	SoyBase	N/A	ISS
KOG2944	KOG	Glyoxalase	JGI		ISS
PTHR10374	Panther	LACTOYLGLUTATHIONE LYASE	JGI		ISS
PF00903	PFAM	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	JGI		ISS
UniRef100_I1LR72	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1LR72_SOYBN	SoyBase	E_val: 2.00E-174	ISS
UniRef100_Q9ZS21	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Lactoylglutathione lyase n=2 Tax=Glycine max RepID=LGUL_SOYBN	SoyBase	E_val: 7.00E-132	ISS

Expression Patterns of Glyma12g08470

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g08470

Paralog	Evidence	Comments
Glyma11g20000	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g08470 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g079700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g08470

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma12g08470

Limit To All Plant Sequences

>Glyma12g08470.2   sequence type=transcript   gene model=Glyma12g08470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTACGTTGTCTCTCTGTTTTTCAATCACTGATAAATACCAAATCCACTAATGGCAGCCACCGCTTCCTTACACCGTCTTTCTCGTCTTCGATTCATCGCCAAACCCCAACCTTTCCTATCTCCTCATTCAACACCATCCCATTTTTCTCTCACCCCCAAAACCAAGAAACCGAATCGATTCCGATTCCGATTCCGATCAATGGCTGCGGAACCCAAGGAATCGCCTTCCAACAACCCCGGTCTTCACACTACCCCTGACGAAGCCACCAAGGGTTACATCATGCAACAAACTATGTTCAGAATCAAGGACCCCAAAGTGAGCCTTGATTTTTATTCTCGCGTCTTGGGCATGTCTTTGCTTAAGAGATTGGATTTTCCGGAGATGAAGTTCAGCCTGTACTTCATGGGCTATGAGGATACAACAGAAGCTCCAAGTAATCCAATTGATAAAGTGGTTTGGACCTTTTCTCAGAAGGCTACAATTGAACTGACACATAATTGGGGTACTGAAAGTGATCCTGAGTTCAAAGGCTACCACAATGGCAATTCTGAACCTCGTGGCTTTGGTATGTGATATTTCATTTCATTTAATTTGGTACAGGTTTTGACTCTAAACTTGATTACAGTTTGAGTTTGTTATCCTAAATATATGCTGAATCACTGACCATTATTCTTGCCTCCGTATATTGTTGCAATGTTTAGGTCCTTATTTGATGCTTTGAGTTAACATGTTTCATGATTACCTTTAGTTGTAAACACCTTTTATTAAAATTTTCTCTTGTACACCATGGCACAGTTGTGTGTTTGCTTCCTTTAAACAGGAAATGTCAAGAGAGGCATTGATTTCATTAAATGATGAACTTAGTAGGCCGTAATTTTTGAAATGTTTGGAGTAACTAAACAATGTTAGATCATGTGAAAATATCCAAAACAGTTTTATCTTGAGCACACCTTAGATTACCCTTTGGGATTATTTTCTGCATTTCCTTGTTTTCGGATAGCCAGTTTGCATTCCTTTTAAGTTTCTGTGCAGTACCTGAAGAATGCAGATGGACTGTAAGTTGAAAAAGTTAATTTTTCCTGGTCACT

>Glyma12g08470.3   sequence type=transcript   gene model=Glyma12g08470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGACTCTCCCTCAGTCTCATCTAAAAGTAAAGAAACCGAATCGATTCCGATTCCGATTCCGATCAATGGCTGCGGAACCCAAGGAATCGCCTTCCAACAACCCCGGTCTTCACACTACCCCTGACGAAGCCACCAAGGGTTACATCATGCAACAAACTATGTTCAGAATCAAGGACCCCAAAGTGAGCCTTGATTTTTATTCTCGCGTCTTGGGCATGTCTTTGCTTAAGAGATTGGATTTTCCGGAGATGAAGTTCAGCCTGTACTTCATGGGCTATGAGGATACAACAGAAGCTCCAAGTAATCCAATTGATAAAGTGGTTTGGACCTTTTCTCAGAAGGCTACAATTGAACTGACACATAATTGGGGTACTGAAAGTGATCCTGAGTTCAAAGGCTACCACAATGGCAATTCTGAACCTCGTGGCTTTGGACACATTGGTATAACTGTTGATGACACATACAAGGCATGTGAAAGATTTCAGAATCTGGGAGTTGAGTTTGTTAAGAAGCCAGATGATGGGAAAATGAAAGGTATAGCATTTATTAAAGATCCTGATGGATACTGGATTGAAATCTTTGATCGAAAAACAATAGGAAATGTAACACAAGCTCCCGCTTAGGCTTAAGATAACACCTTCAGGTCCGGCTCTTCTGTGATACGTTCTGATCTCCTCTGATTTAATTGGGTCTTTGCTCGTACATGGAGTGTGTAGGTTTTTTCGAGATTCCCTTGAATGCATAATTTGTAGTCAAACCAGAACGAATAAGAAGGATTGTGTTGTGAATCTTATAAATTTTTGTTCTTTTAATTTAAAAAACCTAGCCAATATTGGAACTAGTGACTTGATTCTACTCTTCCATTGGATGTGTGATACGAATGAGTACTTCTAAAGACAACATAAAAACTCTACAGCAGTAATAATAATATGTGAGAGGAGAATCCTAACCAGTG

Coding sequences of Glyma12g08470

Limit To All Plant Sequences

>Glyma12g08470.1   sequence type=CDS   gene model=Glyma12g08470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGCCACCGCTTCCTTACACCGTCTTTCTCGTCTTCGATTCATCGCCAAACCCCAACCTTTCCTATCTCCTCATTCAACACCATCCCATTTTTCTCTCACCCCCAAAACCAAGAAACCGAATCGATTCCGATTCCGATTCCGATCAATGGCTGCGGAACCCAAGGAATCGCCTTCCAACAACCCCGGTCTTCACACTACCCCTGACGAAGCCACCAAGGGTTACATCATGCAACAAACTATGTTCAGAATCAAGGACCCCAAAGTGAGCCTTGATTTTTATTCTCGCGTCTTGGGCATGTCTTTGCTTAAGAGATTGGATTTTCCGGAGATGAAGTTCAGCCTGTACTTCATGGGCTATGAGGATACAACAGAAGCTCCAAGTAATCCAATTGATAAAGTGGTTTGGACCTTTTCTCAGAAGGCTACAATTGAACTGACACATAATTGGGGTACTGAAAGTGATCCTGAGTTCAAAGGCTACCACAATGGCAATTCTGAACCTCGTGGCTTTGGACACATTGGTATAACTGTTGATGACACATACAAGGCATGTGAAAGATTTCAGAATCTGGGAGTTGAGTTTGTTAAGAAGCCAGATGATGGGAAAATGAAAGGTATAGCATTTATTAAAGATCCTGATGGATACTGGATTGAAATCTTTGATCGAAAAACAATAGGAAATGTAACACAAGCTCCCGCTTAG

>Glyma12g08470.2   sequence type=CDS   gene model=Glyma12g08470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGCCACCGCTTCCTTACACCGTCTTTCTCGTCTTCGATTCATCGCCAAACCCCAACCTTTCCTATCTCCTCATTCAACACCATCCCATTTTTCTCTCACCCCCAAAACCAAGAAACCGAATCGATTCCGATTCCGATTCCGATCAATGGCTGCGGAACCCAAGGAATCGCCTTCCAACAACCCCGGTCTTCACACTACCCCTGACGAAGCCACCAAGGGTTACATCATGCAACAAACTATGTTCAGAATCAAGGACCCCAAAGTGAGCCTTGATTTTTATTCTCGCGTCTTGGGCATGTCTTTGCTTAAGAGATTGGATTTTCCGGAGATGAAGTTCAGCCTGTACTTCATGGGCTATGAGGATACAACAGAAGCTCCAAGTAATCCAATTGATAAAGTGGTTTGGACCTTTTCTCAGAAGGCTACAATTGAACTGACACATAATTGGGGTACTGAAAGTGATCCTGAGTTCAAAGGCTACCACAATGGCAATTCTGAACCTCGTGGCTTTGGTATGTGA

>Glyma12g08470.3   sequence type=CDS   gene model=Glyma12g08470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGCGGAACCCAAGGAATCGCCTTCCAACAACCCCGGTCTTCACACTACCCCTGACGAAGCCACCAAGGGTTACATCATGCAACAAACTATGTTCAGAATCAAGGACCCCAAAGTGAGCCTTGATTTTTATTCTCGCGTCTTGGGCATGTCTTTGCTTAAGAGATTGGATTTTCCGGAGATGAAGTTCAGCCTGTACTTCATGGGCTATGAGGATACAACAGAAGCTCCAAGTAATCCAATTGATAAAGTGGTTTGGACCTTTTCTCAGAAGGCTACAATTGAACTGACACATAATTGGGGTACTGAAAGTGATCCTGAGTTCAAAGGCTACCACAATGGCAATTCTGAACCTCGTGGCTTTGGACACATTGGTATAACTGTTGATGACACATACAAGGCATGTGAAAGATTTCAGAATCTGGGAGTTGAGTTTGTTAAGAAGCCAGATGATGGGAAAATGAAAGGTATAGCATTTATTAAAGATCCTGATGGATACTGGATTGAAATCTTTGATCGAAAAACAATAGGAAATGTAACACAAGCTCCCGCTTAG

Predicted protein sequences of Glyma12g08470

Limit To All Plant Sequences

>Glyma12g08470.1   sequence type=predicted peptide   gene model=Glyma12g08470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAATASLHRLSRLRFIAKPQPFLSPHSTPSHFSLTPKTKKPNRFRFRFRSMAAEPKESPSNNPGLHTTPDEATKGYIMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFMGYEDTTEAPSNPIDKVVWTFSQKATIELTHNWGTESDPEFKGYHNGNSEPRGFGHIGITVDDTYKACERFQNLGVEFVKKPDDGKMKGIAFIKDPDGYWIEIFDRKTIGNVTQAPA*

>Glyma12g08470.2   sequence type=predicted peptide   gene model=Glyma12g08470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAATASLHRLSRLRFIAKPQPFLSPHSTPSHFSLTPKTKKPNRFRFRFRSMAAEPKESPSNNPGLHTTPDEATKGYIMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFMGYEDTTEAPSNPIDKVVWTFSQKATIELTHNWGTESDPEFKGYHNGNSEPRGFGM*

>Glyma12g08470.3   sequence type=predicted peptide   gene model=Glyma12g08470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAAEPKESPSNNPGLHTTPDEATKGYIMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFMGYEDTTEAPSNPIDKVVWTFSQKATIELTHNWGTESDPEFKGYHNGNSEPRGFGHIGITVDDTYKACERFQNLGVEFVKKPDDGKMKGIAFIKDPDGYWIEIFDRKTIGNVTQAPA*

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