Glyma12g08460 - SoyBase

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Report for Sequence Feature Glyma12g08460

Feature Type:	gene_model
Chromosome:	Gm12
Start:	6207216
stop:	6210690
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g08460

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G05160	AT	Annotation by Michelle Graham. TAIR10: AMP-dependent synthetase and ligase family protein \| chr4:2664451-2666547 FORWARD LENGTH=544	SoyBase	E_val: 4.00E-151	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0009695	GO-bp	Annotation by Michelle Graham. GO Biological Process: jasmonic acid biosynthetic process	SoyBase	N/A	ISS
GO:0005777	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: peroxisome	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004321	GO-mf	Annotation by Michelle Graham. GO Molecular Function: fatty-acyl-CoA synthase activity	SoyBase	N/A	ISS
GO:0016207	GO-mf	Annotation by Michelle Graham. GO Molecular Function: 4-coumarate-CoA ligase activity	SoyBase	N/A	ISS
PTHR24096	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24096:SF43	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00501	PFAM	AMP-binding enzyme	JGI		ISS
UniRef100_H2BER4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 4-coumarate:CoA ligase n=2 Tax=Glycine max RepID=H2BER4_SOYBN	SoyBase	E_val: 3.00E-158	ISS
UniRef100_UPI000233C2DE	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233C2DE related cluster n=1 Tax=unknown RepID=UPI000233C2DE	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma12g08460

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g08460

Paralog	Evidence	Comments
Glyma11g20020	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g08460 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g079600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g08460

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma12g08460

Limit To All Plant Sequences

>Glyma12g08460.2   sequence type=CDS   gene model=Glyma12g08460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGATGGCGGGGCCGGTGACGCAGGGGGACACGGCGGCGCTACTATACTCCTCGGGAACGACCGGATTGAGCAAGGGAGTGGTGCTGACGCACCGGAACTTCATCGCGGCGTCGGTGATGATCGGCATGGACGACGACATCGCCGGGGAGCAAAACGACGTGTACCTGTGCGTTCTGCCGATGTTTCACGCATTCGGGCTGGCAGTGGTGACGTACGCGGCGCTGCAGCGAGGGAGCGCGGTGGTGGTTATGGGGAGATTCGAGCTGAAGGCGCTTCTGAGGGCGGTTGAGAAGCACTGGGTGACGAAGCTGTGGCTCGTGCCTCCGATCCTGCTAGCTCTGGCGAAACAGAGCGTGGGTTATGGTATGACAGAAACTTGTGGCATTGTTTCTTTGGAGAATCCAAGAGTAGGGGTTCGTCATACTGGCTCAACGGGAACGCTAGGTTCAGGAGTCGAAGCTCAAATAGTGAGTGTGGATACACAGAAGCCTCTCCCTCCTAGACAGTTGGGAGAGATATGGGTGCGGGGACCTAACATGATGCAAGGAGATCTTGGATATTTTGATGAAGATGGACAACTTTATGTGGTTGACCGTATCAAAGAACTGATCAAGTACAAAGGTTTTCAGGTTGCACCAGCAGAACTTGAAGGGCTTCTCGTTTCTCACCCTGAAATACTAGAGGCTGTTGTTGTCCCATATCCTGATGATGAGGCTGGTGAGGTTCCAATTGCCTATGTTGTTCGCTCACCCAATAGTTCGCTGACTGAAGAAGAAATTCAGAAGTTTATTGCTAAGCAGGTTGCACCTTTCAAAAAATTGCAAAGGGTAACATTCATCAACAGTGTTCCTAAGACAGCTTCAGGAAAAATTCTCAGAAGAGAGCTTACTGCAAAAGCACGATCCAAAATATAA

Predicted protein sequences of Glyma12g08460

Limit To All Plant Sequences

>Glyma12g08460.2   sequence type=predicted peptide   gene model=Glyma12g08460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEMAGPVTQGDTAALLYSSGTTGLSKGVVLTHRNFIAASVMIGMDDDIAGEQNDVYLCVLPMFHAFGLAVVTYAALQRGSAVVVMGRFELKALLRAVEKHWVTKLWLVPPILLALAKQSVGYGMTETCGIVSLENPRVGVRHTGSTGTLGSGVEAQIVSVDTQKPLPPRQLGEIWVRGPNMMQGDLGYFDEDGQLYVVDRIKELIKYKGFQVAPAELEGLLVSHPEILEAVVVPYPDDEAGEVPIAYVVRSPNSSLTEEEIQKFIAKQVAPFKKLQRVTFINSVPKTASGKILRRELTAKARSKI*

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