Glyma12g08310 - SoyBase

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Report for Sequence Feature Glyma12g08310

Feature Type:	gene_model
Chromosome:	Gm12
Start:	6058350
stop:	6062185
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g08310

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G28000	AT	Annotation by Michelle Graham. TAIR10: chaperonin-60alpha \| chr2:11926603-11929184 FORWARD LENGTH=586	SoyBase	E_val: 0	ISS
GO:0006457	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein folding	SoyBase	N/A	ISS
GO:0009658	GO-bp	Annotation by Michelle Graham. GO Biological Process: chloroplast organization	SoyBase	N/A	ISS
GO:0009790	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo development	SoyBase	N/A	ISS
GO:0009793	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy	SoyBase	N/A	ISS
GO:0016226	GO-bp	Annotation by Michelle Graham. GO Biological Process: iron-sulfur cluster assembly	SoyBase	N/A	ISS
GO:0042026	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein refolding	SoyBase	N/A	ISS
GO:0044267	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular protein metabolic process	SoyBase	N/A	ISS
GO:0048481	GO-bp	Annotation by Michelle Graham. GO Biological Process: ovule development	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0009579	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: thylakoid	SoyBase	N/A	ISS
GO:0009941	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0022626	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosolic ribosome	SoyBase	N/A	ISS
GO:0048046	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: apoplast	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
KOG0356	KOG	Mitochondrial chaperonin, Cpn60/Hsp60p	JGI		ISS
PTHR11353	Panther	CHAPERONIN	JGI		ISS
PTHR11353:SF11	Panther	RUBISCO SUBUNIT BINDING-PROTEIN ALPHA SUBUNIT, RUBA	JGI		ISS
PF00118	PFAM	TCP-1/cpn60 chaperonin family	JGI		ISS
UniRef100_I1LR60	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LR60_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9ZTV1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Chaperonin 60 alpha subunit n=1 Tax=Canavalia lineata RepID=Q9ZTV1_CANLI	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma12g08310

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma12g08310 not represented in the dataset	Glyma12g08310 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g08310

Paralog	Evidence	Comments
Glyma11g20180	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g08310 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g078100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g08310

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma12g08310

Limit To All Plant Sequences

>Glyma12g08310.1   sequence type=CDS   gene model=Glyma12g08310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCTCAACCAACGCTCTCTCTTCAGCCTCCATTCTACGCTCTCCCAACCGCCAGTCTCTGACCCGAAGAGCGAACCATAATGGAAGAGTAAATTACCGGAAACCGAATAACCGTTTCTCCGTGAAAGCCTCCGCCAAAGAGATTGCCTTTGACCAGCATTCCCGCTCTGCTATGCAGGCCGGCATTGACAAGCTCGCCGACGCTGTTGGGCTCACTCTTGGGCCCAGAGGGAGGAATGTTGTGTTGGATGAGTTTGGAAGTCCTAAAGTGGTCAACGATGGTGTCACCATTGCTCGCGCAATCGAGCTTCCCGATCCTATGGAGAATGCTGGTGCAGCTCTTATCAGAGAGGTTGCTAGCAAGACTAACGACTCTGCGGGTGATGGGACTACCACGGCTTCGGTTCTTGCTCGCGAGATAATTAAGCTGGGGCTTCTCAGTGTGACTTCTGGGGCAAATCCTGTGTCTCTTAAGAGAGGGATTGATAAGACTGTGCAGGGTTTGGTGGAGGAGTTGGAGAAGAAGGCTAGGCCTGTCAAAGGTGGAGATGATATCAAAGCTGTTGCTTCCATTTCTGCTGGAAATGATGAGTTGATTGGGCAAATGATTGCGGAAGCAATTGATAAGGTTGGACCTGATGGTGTTTTGTCCATTGAGTCTTCATCATCGTTTGAGACCACAGTTGAAGTGGAAGAAGGAATGGAGATTGACAGAGGGTATATCTCGCCTCAATTTGTTACAAACCCTGAGAAGTTGATTGTTGAATTTGAGAATGCGAGAGTGTTGATTACAGATCAGAAGATTTCAGCAATAAAAGACATTATACCACTGTTGGAGAAAACCACTCAGTTGAGAGCTCCTTTGCTTATCATTGCCGAGGATGTCACTGGTGAGGCTTTGGCCACCCTTGTCGTGAATAAGCTGCGTGGTATCCTTAACGTTGCTGCCATTAAAGCTCCTGGCTTTGGTGAGCGGCGAAAGGCCCTGCTTCAAGACATTGCTATATTGACTGGTGCTGAGTTCCAAGCTAGTGATCTGGGTCTGCTTGTTGAAAACACCTCAGTGGAGCAGCTTGGTTTGGCTAGGAAAATTACCATCTCCAAGGATTCTACCACTGTCATTGCTGATGCTGCGACAAAGGATGAGTTGCAAGCCAGGGTTGCTCAGTTAAAGAAGGAGCTGTCTCAGACAGACTCAGTATATGATACTGAGAAACTGGCTGAGAGGATAGCTAAACTGTCTGGTGGAGTTGCAGTCATCAAGGTTGGTGCTGCTACAGAGACTGAGCTTGAGGATCGGAAGCTCCGAATAGAGGATGCCAAGAATGCAACTTTTGCTGCCATTGAGGAAGGTATTGTACCTGGGGGTGGCACTGCACTGGTTCATCTCTCCACTCATGTCCCAGCAATCAAGGACAAGCTTGAGGATGCAGATGAGAGGCTAGGAGCTGACATTGTGCAAAAGGCACTGATAGCTCCTGCAGCATTGATTGCTCAAAATGCTGGAATAGAAGGTGAAGTTGTTGTGGAGAAAATAAAGAGTGGTGAATGGGAGGTCGGTTACAATGCCATGGCAGACAGGTATGAGAATTTAGTGGAGGCTGGAGTTATCGACCCTGCCAAGGTAACTAGGTGTGCTTTGCAGAATGCTGCTTCAGTTGCTGGAATGGTGTTGACCACGCAGGCCATTGTGGTGGAGAAACCTAAGCCCAAGGCACCTGTAGCTGGTGCCCCACAAGGCCTTACCGTTTGA

Predicted protein sequences of Glyma12g08310

Limit To All Plant Sequences

>Glyma12g08310.1   sequence type=predicted peptide   gene model=Glyma12g08310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASTNALSSASILRSPNRQSLTRRANHNGRVNYRKPNNRFSVKASAKEIAFDQHSRSAMQAGIDKLADAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELPDPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVQGLVEELEKKARPVKGGDDIKAVASISAGNDELIGQMIAEAIDKVGPDGVLSIESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLIVEFENARVLITDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAILTGAEFQASDLGLLVENTSVEQLGLARKITISKDSTTVIADAATKDELQARVAQLKKELSQTDSVYDTEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGTALVHLSTHVPAIKDKLEDADERLGADIVQKALIAPAALIAQNAGIEGEVVVEKIKSGEWEVGYNAMADRYENLVEAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEKPKPKAPVAGAPQGLTV*

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