Glyma12g08290 - SoyBase

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Report for Sequence Feature Glyma12g08290

Feature Type:	gene_model
Chromosome:	Gm12
Start:	6044115
stop:	6051073
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g08290

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G60740	AT	Annotation by Michelle Graham. TAIR10: ABC transporter family protein \| chr5:24425824-24430269 REVERSE LENGTH=1109	SoyBase	E_val: 0	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016887	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATPase activity	SoyBase	N/A	ISS
GO:0017111	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity	SoyBase	N/A	ISS
GO:0042626	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATPase activity, coupled to transmembrane movement of substances	SoyBase	N/A	ISS
KOG0061	KOG	Transporter, ABC superfamily (Breast cancer resistance protein)	JGI		ISS
PTHR19241	Panther	ATP-BINDING CASSETTE TRANSPORTER	JGI		ISS
PTHR19241:SF19	Panther	ATP-BINDING CASSETTE TRANSPORTER-RELATED	JGI		ISS
PF00005	PFAM	ABC transporter	JGI		ISS
UniRef100_B9GZM7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: White-brown-complex ABC transporter family (Fragment) n=1 Tax=Populus trichocarpa RepID=B9GZM7_POPTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233C2D9	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233C2D9 related cluster n=1 Tax=unknown RepID=UPI000233C2D9	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma12g08290

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g08290

Paralog	Evidence	Comments
Glyma11g20220	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g08290 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g078000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g08290

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma12g08290

Limit To All Plant Sequences

>Glyma12g08290.2   sequence type=CDS   gene model=Glyma12g08290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATCATGAATCTTCCTAACCAAACAAGGAAGGTTCCTTTTGTTATAGTTGTTGTATTAATAAACTTCATTGTGGGACCCAGGCTAATTTTTTGTCAGAAGAGTAGTGGTGGTGGTGGCGGCCTTGAGATAATCGCTCAAGAAGTATACCGTAGCATGTCCAATTATACATCTGTGTTCAAGAGTGCAATAAAAAAAGAATTGGGTTATTGCATAGTTGATGTGGATGCTGATTGGAATGGAGCATTCAATTTCACCAAAGATCTTACCTTTTTGACCATTTGTGCCCAACAATTGAAAGGAGATATTACACAACGCATGTGCACAGAAGCAGAAATACAAGCTTATGGCCAAAGTTTTGCTAGTGGGAAGTCAGGAACCAGATCCAGCTTCTTGAAACCCAACATAAATTGTAATTTGAGCTCATGGGTTAATGGTTGTGAACCCGGATGGGGTTGCAAAGCTAATAAAAAAGTAGACATTGGTAGTAACAAAAAGGACATACCTATTAGATCCCTTGATTGTCAACCTTGTTGTGAAGGCTTCTTTTGCCCTCATGGTCTCACTTGCATGATACCTTGCCCATTAGGCTCTTATTGTCCACGTGCACAGCTCAATAAAACTAGTGGAGTATGTGAACCATATCGTTATCAGCTTCCTCCTGGAAAGCCTAACCATACTTGTGGTGGGGCAGATATTTGGGCAGATATTCAGAGTAGCGGTGAGGTGTTCTGTTCAGCAGGGTCATTTTGTCCCTCTACAATTGTAAAAAATCCTTGCAATAAAGGGTATTATTGTAGAACAGGTTCTACTACTCAGGAACGTTGTTTCAAGTTGGCATCTTGTGAGCCTAAGTCATCAAATCAAAATATTACTGCATATGGTGTCTTGGTTTTTGCTGGCTTGTGTTTTTTGCTTATTATCATATACAATTGTTCTGACCAAGTTCTTGCAACTCGAGAAAAAAGACAAGCAAAATCAAGAGAAAGGGCTGCACAAAGTGTGCGAGAATCACAAGCACGTGAAAAATGGAAATCTGCAAAAGACGTGGCTAAAAAACATGCAGTAGGACTACAGTCACAATTGTCACGTACATTTTCTCGCAAAACTTCAAAGAAGCCAGATTTGAAAGGTGCTGCTTTACCACCTGTTGGTACATCAAAAGGAAAGAAAAAGGACAAAAATAATCTCTCAAAAATAATAAATGACATTGAGGAAAATCCTGATAGTTCAGAAGGGTTTAATGTTCAGATAGGAGATAAAAATGTCAAGAAACAAGCACCAAGGGGTAAGCAATTACACACTCAAAGTCAAATTTTCAAGTATGCATATGGTCAGATTGAAAAAGAGAAGGCTTTAGCAGAACAAAACAAAAACTTAACCTTTTCTGGAGTAATTTCAATGGCTAATGACATTGAGATAAGGAAGAGACCTACCATTGAGGTTGCTTTCAAAGACTTAACCCTCACTTTGAAAGGGAAAAACAAACATTTATTGAGATGTGTGACTGGTAAATTACATCCTGGTAGAGTTTCAGCAGTCATGGGGCCATCTGGGGCTGGCAAGACAACATTTCTTTCAGCTTTAACTGGAAAAGCAACTGGGTGCCACACAACTGGGCAAGTTCTTGTAAATGGTAAAGAATCTTCTATCAGGTCATACAAGAAAATCATTGGGTTTGTGCCACAAGATGATATTGTGCATGGCAATTTGACAGTGGAGGAAAATCTATGGTTTAGTGCTAGATGCAGACTCTCTGCTGATCTACCAAAAGAAGAGAAGGTGTTAGTGGTTGAAAGAGTCATTGAGTCATTAGGTCTACAAGCAATAAGAGATTCTTTAGTTGGGACAGTGGAGAAACGAGGAATCTCGGGAGGTCAAAGGAAAAGAGTAAATGTTGGATTGGAAATGGTTATGGAACCTTCCCTTTTAATTTTGGACGAACCCACTTCTGGATTGGATAGTTCATCTTCTCAATTACTACTTAGAGCACTTAGACGTGAAGCTCTTGAGGGAGTAAACATATGTATGGTCCTTCACCAACCAAGTTACACCTTGTTCAAGATGTTTGACGATTTTATACTACTTGCAAAGGGAGGTCTTACAGTGTATCATGGACCAGTGAACAAAGTGGAAGAGTATTTTTCAAGCATGGGCATTAATGTCCCTGACCGTGTTAACCCTCCAGATTACTTCATTGACATTTTAGAAGGAATAGTAAAATTAAGCCCGAGCTTAGGAGTGAACTATAAACAACTACCTGTTAGATGGATGCTTCATAATGGGTACCCTGTGCCCATGGATATGCTAGCAACTATGGAAGGAATGGCCGCGCCAAGTGGTGAAGGTTCATCACATGGAGCAGCAACTGCTACACAAAACAATGAGGCACCTTCTTTTGCTGGAGAACTTTGGCAGGATGTGAAGTGCAATGTTGAGATGAAAAAGGATATCCTTCACCTTAACTTCTTAAGCTCAAATGATTTGTCTAATCGAATAACACCAGGAGTGTTCAACCAATACAAATACTTTCTTGGAAGAGTTGGTAAGCAGCGACTAAGAGAAGCTAGAACACAGGCTGTGGATTTTTTGATTTTGCTATTAGCTGGCCTTTGCTTAGGAACACTTGCTAAAGTGAGTGATGAATCATTTGGAGCAACTGGTTACACATACACTGTAATAGCAGTATCTCTCCTTTCTAAAATTGCGGCTTTAAGATCATTCTCATTGGATAAGTTGCACTACTGGCGAGAAAGTTCTTCAGGCATGAGTAGTTTGGCTTACTTTCTATCAAAGGATACCGTCGACCATTTTAGCACAATTATCAAGCCACTAGTTTACCTTTCAATGTTTTATTTCTTCAACAATCCAAGATCTTCAGTCACAGATAACTACATGGTTCTGTTGTGTTTAGTCTATTGTGTCACTGGCATAGCTTATGTGTTAGCAATCTTTCTTCAACCAGGTCCAGCCCAATTGTGGTCAGTGTTACTTCCAGTAGTTTTGACTTTGGTAGCAACCTATAGCAGTGAAAAAGATAGCAAATATATAAAATTTCTATCTGACTTGTGCTACACCAAGTGGGCTCTTGAAGCATTTGTAATATCAAATGCTAAAAGATACACTGGAGTTTGGTTATTAAGTCGATGTGGTGCACTCTATACTAATGGCTATGATCTTAAACATTGGTACCAATGTTTAGGCCTTCTTATCGTAACGGGAATCATTAGTCGCATGCTTGCATTTTTCTGTATGATAACCTTCCAGAAGAAATAG

Predicted protein sequences of Glyma12g08290

Limit To All Plant Sequences

>Glyma12g08290.2   sequence type=predicted peptide   gene model=Glyma12g08290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIMNLPNQTRKVPFVIVVVLINFIVGPRLIFCQKSSGGGGGLEIIAQEVYRSMSNYTSVFKSAIKKELGYCIVDVDADWNGAFNFTKDLTFLTICAQQLKGDITQRMCTEAEIQAYGQSFASGKSGTRSSFLKPNINCNLSSWVNGCEPGWGCKANKKVDIGSNKKDIPIRSLDCQPCCEGFFCPHGLTCMIPCPLGSYCPRAQLNKTSGVCEPYRYQLPPGKPNHTCGGADIWADIQSSGEVFCSAGSFCPSTIVKNPCNKGYYCRTGSTTQERCFKLASCEPKSSNQNITAYGVLVFAGLCFLLIIIYNCSDQVLATREKRQAKSRERAAQSVRESQAREKWKSAKDVAKKHAVGLQSQLSRTFSRKTSKKPDLKGAALPPVGTSKGKKKDKNNLSKIINDIEENPDSSEGFNVQIGDKNVKKQAPRGKQLHTQSQIFKYAYGQIEKEKALAEQNKNLTFSGVISMANDIEIRKRPTIEVAFKDLTLTLKGKNKHLLRCVTGKLHPGRVSAVMGPSGAGKTTFLSALTGKATGCHTTGQVLVNGKESSIRSYKKIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKEEKVLVVERVIESLGLQAIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICMVLHQPSYTLFKMFDDFILLAKGGLTVYHGPVNKVEEYFSSMGINVPDRVNPPDYFIDILEGIVKLSPSLGVNYKQLPVRWMLHNGYPVPMDMLATMEGMAAPSGEGSSHGAATATQNNEAPSFAGELWQDVKCNVEMKKDILHLNFLSSNDLSNRITPGVFNQYKYFLGRVGKQRLREARTQAVDFLILLLAGLCLGTLAKVSDESFGATGYTYTVIAVSLLSKIAALRSFSLDKLHYWRESSSGMSSLAYFLSKDTVDHFSTIIKPLVYLSMFYFFNNPRSSVTDNYMVLLCLVYCVTGIAYVLAIFLQPGPAQLWSVLLPVVLTLVATYSSEKDSKYIKFLSDLCYTKWALEAFVISNAKRYTGVWLLSRCGALYTNGYDLKHWYQCLGLLIVTGIISRMLAFFCMITFQKK*

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