SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G46220 | AT | Annotation by Michelle Graham. TAIR10: unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2042 (InterPro:IPR018611); Has 559 Blast hits to 533 proteins in 154 species: Archae - 3; Bacteria - 32; Metazoa - 305; Fungi - 42; Plants - 50; Viruses - 3; Other Eukaryotes - 124 (source: NCBI BLink). | chr3:16979174-16983970 FORWARD LENGTH=804 | SoyBase | E_val: 0 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0010413 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glucuronoxylan metabolic process | SoyBase | N/A | ISS |
| GO:0045492 | GO-bp | Annotation by Michelle Graham. GO Biological Process: xylan biosynthetic process | SoyBase | N/A | ISS |
| KOG2235 | KOG | Uncharacterized conserved protein | JGI | ISS | |
| PF09743 | PFAM | Uncharacterized conserved protein (DUF2042) | JGI | ISS | |
| UniRef100_G7JSN2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: E3 UFM1-protein ligase-like protein n=1 Tax=Medicago truncatula RepID=G7JSN2_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233D730 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233D730 related cluster n=1 Tax=unknown RepID=UPI000233D730 | SoyBase | E_val: 0 | ISS |
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Glyma12g07980 not represented in the dataset |
Glyma12g07980 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma11g15470 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.12g074800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma12g07980.1 sequence type=CDS gene model=Glyma12g07980 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATGACGAATTGCTCGAGCTGCAGCGACAATTCGAGTTCGCACAGCAAGCCAAGTCCAGCATTCGATTATCGGAGCGAAACGTCGTCGAATTGGTCCAAAAACTGCAGCAACTCCAATTCATCGATTTCGAGCTTCTCCACACTGTCTCCGGCAAAGAATATATCACTCTCGATCAGCTGAGGAACGAGATGGTGGCGGAGGTGAAGAAATTAGGGCGCATTTCTTTGATCGATCTCGCTGACGCTACTGGAGTTGACTTGTACTACGTGGAGAAACAGGCTCAGAGCGTTGTAACGGAACACGGAGAACTGATGTTGACTCAGGGAGAAATTATGTCGGAGTCTTATTGGGACTCGATTGCAGAAGAGATTAACGAGAGGCTTCAGGAATGTAGTCAGATTGCTCTGACCGAACTCGCCGCGCAATTGAACGTAGGTTTGGACTTGGTTTCCTCCGTGTTGGAGCCGCGCCTTGGAACAATTGTGAAAGGAAGGCTTGAAGGTGGACAGTTGTATACTCCTGCCTATGTGGCTCGTGTTGGTGCCATGGTTCGTGGTGCTGTGCGGGGCATCACCGTTCCCACGAATTTGACTGTGGTATGGAGCTCATTGCAGCAGTTGCTGCAAGAAATTGATGGAACCAGTGGTTTGGCTGTTGAAGGATCTTTCTTCCAGTCTTTGTTTAATGGACTTGTGAAGGAAGGCAAGGTTCTAGGGTCGCTTCGTGCAGGAGTACACTGGACGCCCGCTGTATTTGCTGTTGCTCAAAGGGAGTTTGTGGACTCATTCTTTTCTCAGAATTCTTTTATCACATATGAAGCGCTGCACAAACTTGGAATTCCCCAGCCCATTCAATTCTTGCAGTCCAGATATCCTGAAGGCAAGCCGCTAGTTACAACATTTGTTCATTCATCGATGATTGAGATGGTAGATGCTTCTACTGAGGATGCTCTTGACCGTGGTAGCTGGAGTGATTCTCTTTCCTTATTGCCTTCATCATTTACACCCCAAGATGCATCTAAAATGTTGTCCCTATGTCAATCTATTCAAAATGCTGTTAAGTCTAACAAAGCACATATTTTTGGGGATTTTTATGTGTTGAGCAGCAGCTTTATAAAGGACATCTGTGATCGTGTTGTGCGAGAATTGGAGACATCAGGTGTTTCAGGGTCTGCTGGTGACTTTCAAGTATCCAACGAAGCAAAATTAGGGCATGAGTCAAGCAGGTTGAATGACTCCAATGAGATGGCGAGTGATGGTGGTGCCAACAGGCTAGCTGATAAAGGATCAAAGAAAAAAAAGGGGAAAGCCACTGGGAATACAGTAGCAAATCTATCTGAAAGTGCTGCAGATAACCAGGAACAGACTTTGACAAAATCTAAGAGAGGCCAGAAAAGAGGTAAGGATACATCTTCACAGACGTCAGATTCAAAGACAGGTTCTAGGAAAGAATTGCTTAAAATGAAAGAGGATAATCCCGGTCCCTCAGAAGAATGGATCATGCAGAAAATTACAGCATTAGTTTCTGATTTTGAAGAACAAGGTATAGATGACCCTGAAACAATTCTAAGGCCTTTGGCTAACCAATTAAGGCCTACAATAATCAGTTATTGGATGGAGAAAAAGAAGGCATTGCTTACAAACAATGCAGAAAGAATGAAACATTTGCTTGATAATTTGCAAAAGAAACTTGATGAGTCTTTCTTAAACATGCAGCTGTATGAAAAAGCCTTAGAACTGTTTGAAGATGATCAATCAACTTCTGTTGTTTTGCATAGGCATTTACTAAGGACAGTAGCAGCTCCTATGGTGGATATGCTTCTTCAAAACCTGGATGAGCACAACAAATTAAAGAATGGACATGACGAGCAGGAAGCTCCAAATTCTGAATCTGTTTCACTTAGTCCTGGAGACAGAACTGTCATTTTTAAGAGTTTTCCAGGAGCTCTTGCAAATAAGGCTCTTGCTGTTGTAGAAGCATTGGAGGGAAAGAGTGTGGAGATATTCATGGCTGCTTTTAGAATGGTAACAGAAGAGAGTGGGTTGCCTTTGAAAAAGCTTGACAAGAAACTAGAAAGAACACTTTTACATTCATATCGTAAGGAGTTGACAGCTCAAGTTTCTGCTGAGACTGACCCTGTATCGCTTCTTCCAAAAGTTGTGTCTTTACTTTATATCCAGGTTTACCACAAAGCACTTCAAGCTCCTGGAAGGGCCATTTCTGTTGCTATTTCCCATTTAAAGGATAAGCTAGACGAGTCAGCATGCAAGATTTTAACTGATTATCAAACTGCCACAGTGACTCTTTTGACATTATTAGCAGCTTCACCCGGTGATGAAGAGGATTGTGCATCTGATAGGATTTTGAGTAAAAAGGAGCTTCTAGAGAGCCAAATGCTGGACCTCAAAAGCTTGGTTTTGAGCACCTCCCAATCTTCGTAA
>Glyma12g07980.1 sequence type=predicted peptide gene model=Glyma12g07980 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDDELLELQRQFEFAQQAKSSIRLSERNVVELVQKLQQLQFIDFELLHTVSGKEYITLDQLRNEMVAEVKKLGRISLIDLADATGVDLYYVEKQAQSVVTEHGELMLTQGEIMSESYWDSIAEEINERLQECSQIALTELAAQLNVGLDLVSSVLEPRLGTIVKGRLEGGQLYTPAYVARVGAMVRGAVRGITVPTNLTVVWSSLQQLLQEIDGTSGLAVEGSFFQSLFNGLVKEGKVLGSLRAGVHWTPAVFAVAQREFVDSFFSQNSFITYEALHKLGIPQPIQFLQSRYPEGKPLVTTFVHSSMIEMVDASTEDALDRGSWSDSLSLLPSSFTPQDASKMLSLCQSIQNAVKSNKAHIFGDFYVLSSSFIKDICDRVVRELETSGVSGSAGDFQVSNEAKLGHESSRLNDSNEMASDGGANRLADKGSKKKKGKATGNTVANLSESAADNQEQTLTKSKRGQKRGKDTSSQTSDSKTGSRKELLKMKEDNPGPSEEWIMQKITALVSDFEEQGIDDPETILRPLANQLRPTIISYWMEKKKALLTNNAERMKHLLDNLQKKLDESFLNMQLYEKALELFEDDQSTSVVLHRHLLRTVAAPMVDMLLQNLDEHNKLKNGHDEQEAPNSESVSLSPGDRTVIFKSFPGALANKALAVVEALEGKSVEIFMAAFRMVTEESGLPLKKLDKKLERTLLHSYRKELTAQVSAETDPVSLLPKVVSLLYIQVYHKALQAPGRAISVAISHLKDKLDESACKILTDYQTATVTLLTLLAASPGDEEDCASDRILSKKELLESQMLDLKSLVLSTSQSS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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