Glyma12g07710 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma12g07710

Feature Type:	gene_model
Chromosome:	Gm12
Start:	5322929
stop:	5325618
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g07710

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G28510	AT	Annotation by Michelle Graham. TAIR10: Dof-type zinc finger DNA-binding family protein \| chr2:12199383-12200627 REVERSE LENGTH=288	SoyBase	E_val: 2.00E-53	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005730	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleolus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
PF02701	PFAM	Dof domain, zinc finger	JGI		ISS
UniRef100_B9T1Y3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Zinc finger protein, putative n=1 Tax=Ricinus communis RepID=B9T1Y3_RICCO	SoyBase	E_val: 5.00E-125	ISS
UniRef100_UPI000233D5BE	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233D5BE related cluster n=1 Tax=unknown RepID=UPI000233D5BE	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma12g07710

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g07710

Paralog	Evidence	Comments
Glyma11g15761	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g07710 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g072400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g07710

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma12g07710

Limit To All Plant Sequences

>Glyma12g07710.1   sequence type=CDS   gene model=Glyma12g07710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATCCTTCCAGTGGACAACACCAGCAAATGTCTAGCCAGTCATTGGAGAACATGTTGGCATGTTCAAAAGCACAGCAAGAGAGGAAGCCAAGGCCTCAGCCAGAACAGGCTCTGAAGTGTCCCAGATGTGACTCCACCAACACCAAATTCTGCTACTACAATAATTACAGCCTCTCCCAACCAAGGTATTTCTGCAAGTCCTGCAGGAGATATTGGACCAAAGGAGGTACACTTAGGAATGTCCCTGTGGGAGGAGGGTGCAGGAAGAACAAAAGGTCATCATCATCATCATCTTCAACATCAAAGAGAGTTCAAGACCAAGCATTCACACCAAATCCTAACTCTCTCATTGGCCTTCCTTCATTGTCCTATGACTCAAGTGACCTCACTCTTGCATTGGCAAGGCTTCAAAAGCAGTCATGTGGGCAATTGGGGTATGATGAGCATGATCTTTCAATGTTGGGGAACCACCACCCAAGCACCCCATGTGATAATATCCTTGGCATGCATCATCACTCATCATCATCCACAAACCCAGGGTTCTTGGATGCCCTCAGAAGTGGGTTCCTTGGAACACAAAGTAGTAATATGCAGCAGAATCTGTACTATGGATATGGGAATGGAGACATGGGGGAGGTGGACAATGGAAATGCTTCTTGTGGTGGAGAGATGATGATGATGCCTTATAATGATCAAGAAATGAGTGTTGCATCCACACAGGCAGTGACAGTCACCACCATGAAGCAAGAAATTTGCAATGGAAGGGAACCAAGTAGTGAGAGTAGGGTGTTGTGGGGTTTTCCATGGCAATTCAATAATGCTGACACAAACATGGGTGAACTTGACTCAGGAAGAGCTAGTTGGAATGGCATCAATTCATCATGGCATGGACTTCTCAACAGTCCCCTAATGTAG

Predicted protein sequences of Glyma12g07710

Limit To All Plant Sequences

>Glyma12g07710.1   sequence type=predicted peptide   gene model=Glyma12g07710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDPSSGQHQQMSSQSLENMLACSKAQQERKPRPQPEQALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSSSSSSTSKRVQDQAFTPNPNSLIGLPSLSYDSSDLTLALARLQKQSCGQLGYDEHDLSMLGNHHPSTPCDNILGMHHHSSSSTNPGFLDALRSGFLGTQSSNMQQNLYYGYGNGDMGEVDNGNASCGGEMMMMPYNDQEMSVASTQAVTVTTMKQEICNGREPSSESRVLWGFPWQFNNADTNMGELDSGRASWNGINSSWHGLLNSPLM*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain