Glyma12g07640 - SoyBase

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Report for Sequence Feature Glyma12g07640

Feature Type:	gene_model
Chromosome:	Gm12
Start:	5259867
stop:	5263828
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g07640

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G60250	AT	Annotation by Michelle Graham. TAIR10: zinc finger (C3HC4-type RING finger) family protein \| chr5:24252226-24254710 FORWARD LENGTH=655	SoyBase	E_val: 7.00E-149	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG1812	KOG	Predicted E3 ubiquitin ligase	JGI		ISS
PTHR11685	Panther	ARIADNE RING ZINC FINGER	JGI		ISS
PTHR11685:SF18	Panther	UNCHARACTERIZED	JGI		ISS
PF01485	PFAM	IBR domain	JGI		ISS
UniRef100_G7JRG7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: IBR domain containing protein n=1 Tax=Medicago truncatula RepID=G7JRG7_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1LQZ5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1LQZ5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma12g07640

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g07640

Paralog	Evidence	Comments
Glyma11g15820	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g07640 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g071900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g07640

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma12g07640

Limit To All Plant Sequences

>Glyma12g07640.2   sequence type=CDS   gene model=Glyma12g07640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTCACACACTCCCCATGGACTTGCACTCTCTCCTATCGGACCAACACCGCCAGCTCGCCACCGCCGAAGCCATGGAATCGGACCTCGACTTCGCCTTCCGCCTCCAGTTACAGGAAGCCCTTGCGGCCTCCCTCGCCTCCCAGCCCTCCTCTTCCTCCGTCGCAGCTATCGAACAACCCGTCGTCGTCGTTGACGACGACGACGACGTTGCAGCGCCAGGAGCTGGCTCGTCTGGAGCGTGAGATGAAGGACCGGGAACACAGCGAGGCGGAGACGCAAAAAATGAGGGAGGAACTCTGCCGTCGGATCCACGACGAGAAGGTGGCGAGGGAGATTTCCACGATTCCCGAGAAGGACTGGGAGCAGTGGGGCGACAACTTCGAGAAACCGTTCAGAGAGGGCTCGTCCTCTTCGTTGGGGAGTAGAGAGGAGGGCGTTGTTAGGGTTTACTTCAAGGGTTTGGTGAGCGAGGAAAACGTGAGGGGGCAGAATGTCGTGTTGTCTGGGATCGGGGTTGCGATTTGTGACCTAGGCGATAATCTGATATTCGAGGTTTCTAAGTCGCTCGTTGGGAATGACACTAGCAAGGTCGCTGCAGAGATTAAGGCTTTAATTGAGGCTTTCAATGCCGCCATTGCTTTGGACTTGAAGCGCGTCGTTTATTGCTGCGATTATTATCCCCTTTTCCAATTTGTGAGTGGAAAATGGCCTGCAAAACAGCGGAAGATTGCTATGTTGGTTGATCAAGTGGATCTGCTTCAAAGGAAGTTTTCATACTGCAATCCAAGGCTTGTGGCCAGACATAATGTCAAGTTTGCATTTAAGCTTGCAAGAGATGCCATTGAGTCTCAGTCCACGAGGCCTGCGGAATCTGGGAGTAGGAGGAGTTTGAATGAAACTTGTGTCATATGTTTGGAGGAAACTGATGCCAGTCAGATTTTTTCAGTTGATGGCTGTCAACACCGCTATTGCTTCTCGTGCATGAAACAACATGTGGAGGTGAAGTTACTTCATGGAATGGTGCCAAAGTGCCCTCACGAGGGGTGCAAGTATGAGCTTCTAGTCAACAGCTGCCAGAAGTTCTTGACTCAAAAGTTAACTGAGACCATGCAGCAACGAAAATTGGAAGCTTCAATTCCTGTTGCTGAAAAAATTTATTGCCCTTATCCTAGATGCTCTGCATTAATGTCAAAAACTAAGGTTTTAGAGTACTCGAGAAATATCATCGATCAATCTGAACAATCTGGAGTCAAGAAATGCCTAAAATGTCATGGTCTTTTCTGTTTTAATTGCAAGGTCCCTTGGCATAGTGGTATGACATGTAATACTTACAAAAGGATGAATCCTAATCCTCCTGCAGAAGATTTGAAGCTGAAGTTTCTTGCATCAAGGAGCCTATGGCGACAGTGTCTGAAGTGTAACCATATGATTGAACTTGCTGAAGGTTGCTATCACATGACTTGCAGATGTGGTTACGAATTTTGCTATAATTGTGGAGCCGAGTGGAAGGACAAAAAAGCAACATGTGCATGCCCTCTTTGGGCCGAGGACAATATTTGGTTAGATGATCACGAGGAAGAGTTGGAAGATGATGATGATGATGATTATAACTCTGATTATTCTGATGGTTATTATTATTAA

Predicted protein sequences of Glyma12g07640

Limit To All Plant Sequences

>Glyma12g07640.2   sequence type=predicted peptide   gene model=Glyma12g07640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
LTHSPWTCTLSYRTNTASSPPPKPWNRTSTSPSASSYRKPLRPPSPPSPPLPPSQLSNNPSSSLTTTTTLQRQELARLEREMKDREHSEAETQKMREELCRRIHDEKVAREISTIPEKDWEQWGDNFEKPFREGSSSSLGSREEGVVRVYFKGLVSEENVRGQNVVLSGIGVAICDLGDNLIFEVSKSLVGNDTSKVAAEIKALIEAFNAAIALDLKRVVYCCDYYPLFQFVSGKWPAKQRKIAMLVDQVDLLQRKFSYCNPRLVARHNVKFAFKLARDAIESQSTRPAESGSRRSLNETCVICLEETDASQIFSVDGCQHRYCFSCMKQHVEVKLLHGMVPKCPHEGCKYELLVNSCQKFLTQKLTETMQQRKLEASIPVAEKIYCPYPRCSALMSKTKVLEYSRNIIDQSEQSGVKKCLKCHGLFCFNCKVPWHSGMTCNTYKRMNPNPPAEDLKLKFLASRSLWRQCLKCNHMIELAEGCYHMTCRCGYEFCYNCGAEWKDKKATCACPLWAEDNIWLDDHEEELEDDDDDDYNSDYSDGYYY*

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