SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G45300 | AT | Annotation by Michelle Graham. TAIR10: isovaleryl-CoA-dehydrogenase | chr3:16621659-16624848 REVERSE LENGTH=409 | SoyBase | E_val: 0 | ISS |
| GO:0006552 | GO-bp | Annotation by Michelle Graham. GO Biological Process: leucine catabolic process | SoyBase | N/A | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0009083 | GO-bp | Annotation by Michelle Graham. GO Biological Process: branched-chain amino acid catabolic process | SoyBase | N/A | ISS |
| GO:0009744 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to sucrose stimulus | SoyBase | N/A | ISS |
| GO:0009750 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to fructose stimulus | SoyBase | N/A | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0005759 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial matrix | SoyBase | N/A | ISS |
| GO:0003995 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: acyl-CoA dehydrogenase activity | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0008470 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: isovaleryl-CoA dehydrogenase activity | SoyBase | N/A | ISS |
| GO:0016627 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on the CH-CH group of donors | SoyBase | N/A | ISS |
| GO:0050660 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: flavin adenine dinucleotide binding | SoyBase | N/A | ISS |
| KOG0141 | KOG | Isovaleryl-CoA dehydrogenase | JGI | ISS | |
| PTHR10909 | Panther | ELECTRON TRANSPORT OXIDOREDUCTASE | JGI | ISS | |
| PTHR10909:SF121 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00441 | PFAM | Acyl-CoA dehydrogenase, C-terminal domain | JGI | ISS | |
| PF02770 | PFAM | Acyl-CoA dehydrogenase, middle domain | JGI | ISS | |
| PF02771 | PFAM | Acyl-CoA dehydrogenase, N-terminal domain | JGI | ISS | |
| UniRef100_G7JQF7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Isovaleryl-CoA dehydrogenase n=3 Tax=Medicago truncatula RepID=G7JQF7_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1LKD6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LKD6_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma12g07570 not represented in the dataset |
Glyma12g07570 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma11g15900 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.12g071100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma12g07570.2 sequence type=CDS gene model=Glyma12g07570 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCATAGGATCAGCACCGCAGGGTACATTTTTTCTGCAGTTTTCAGAAGGAAATCTCAGCCTCACTCTGCTGCTTTCTCCACCTCCTTGCTCTTCGACGAAACTCAGATACAGTTTAAGGAAAGTGTTGCTCAATTTGCAACAGAAAATATTGCCCCTCATGCTTCCAAAATAGACCACACAAATTATTTCCCAAAGGAGGTGAACTTATGGAAAAGCATGGGAGAATTTAATCTCCTTGGGATTACTGCACCAGAGGAATATGGAGGGCTTGGCCTAGGTTACTTGTATCACTGTATAGCAATGGAAGAGATTAGCCGTGCTTCAGGTTCTGTTGGTCTTTCTTATGGTGCTCATTCAAACTTGTGTATCAATCAGCTGGTGAGGAATGGAAGCCCTGTTCAGAAAGAGAAATATTTACCAAAGCTTATTTCTGGGGATCATGTGGGAGCATTGGCAATGAGCGAGCCCAATTCTGGTTCTGATGTTGTCAGCATGAAATGCAAGGCTGATCGTGTAGATGGGGGCTATGTACTTAATGGGAACAAGATGTGGTGTACTAATGGGCCAGTTGCTCAAACATTAGTTGTCTATGCTAAAACAGACATAACTGCTGGGTCAAAAGGCATTACTGCATTCATCATTGAGAAGGGAATGCCTGGATTCAATACTGCCCAGAAATTGGATAAACTTGGGATGCGAGGAAGTGATACGTGTGAGCTTGTCTTTGAGAATTGCTTTGTTCCAGACGAAAATGTTCTTGGGAAAGAAGGGAAAGGAGTCTATGTCATGATGTCTGGGCTGGATCTGGAGAGACTTGTTTTGGCAGCTGGTCCTCTTGGTATTATGCAGGCATGTCTTGATGTTGTCCTTCCTTATGTTCGACAACGAGAGCAGTTTGGTCGTCCTATTGGGGAGTTTCAGTTTATACAGGGGAAAATTGCTGACATGTATACTTCATTACAGTCCTCAAGGTCTTATGTGTATTCAGTAGCTCGGGACTGCGACAACGGAAAAATTGACCCAAAGGATTGTGCTGGAGCTATACTTTGTGCAGCTGAAAGAGCAACCCAGGTTGCTTTGCAGGCTATACAATGTTTAGGTGGGAATGGTTATGTAAATGAATATCCCACTGGTCGTCTCTTGAGAGATGCCAAACTCTACGAGATTGGTGCAGGAACTAGTGAGATCAGAAGAATGATTATTGGACGTGAGCTCTTCAAGGAGTAA
>Glyma12g07570.2 sequence type=predicted peptide gene model=Glyma12g07570 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MHRISTAGYIFSAVFRRKSQPHSAAFSTSLLFDETQIQFKESVAQFATENIAPHASKIDHTNYFPKEVNLWKSMGEFNLLGITAPEEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRNGSPVQKEKYLPKLISGDHVGALAMSEPNSGSDVVSMKCKADRVDGGYVLNGNKMWCTNGPVAQTLVVYAKTDITAGSKGITAFIIEKGMPGFNTAQKLDKLGMRGSDTCELVFENCFVPDENVLGKEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPIGEFQFIQGKIADMYTSLQSSRSYVYSVARDCDNGKIDPKDCAGAILCAAERATQVALQAIQCLGGNGYVNEYPTGRLLRDAKLYEIGAGTSEIRRMIIGRELFKE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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