SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G02220 | AT | Annotation by Michelle Graham. TAIR10: zinc finger (MYND type) family protein / programmed cell death 2 C-terminal domain-containing protein | chr4:976728-978902 FORWARD LENGTH=418 | SoyBase | E_val: 1.00E-148 | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| KOG2061 | KOG | Uncharacterized MYND Zn-finger protein | JGI | ISS | |
| PTHR12298 | Panther | PCDC2 (PROGRAMMED CELL DEATH PROTEIN 2)-RELATED | JGI | ISS | |
| PTHR12298:SF12 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF01753 | PFAM | MYND finger | JGI | ISS | |
| PF04194 | PFAM | Programmed cell death protein 2, C-terminal putative domain | JGI | ISS | |
| UniRef100_B9T078 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Pcdc2/rp-8, putative n=1 Tax=Ricinus communis RepID=B9T078_RICCO | SoyBase | E_val: 4.00E-152 | ISS |
| UniRef100_UPI000233D5BA | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233D5BA related cluster n=1 Tax=unknown RepID=UPI000233D5BA | SoyBase | E_val: 0 | ISS |
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Glyma12g07520 not represented in the dataset |
Glyma12g07520 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma11g15940 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.12g070400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma12g07520.1 sequence type=CDS gene model=Glyma12g07520 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGACTTATGTGAATGCGGTGCACGTGTTTAGCACTTTCTATTCCAGTCCTAAACACATGGATACTGATGCCATTGGAGATCTTGTTGACAAGCTCAAGGCTATCCAGAATGACAATGTAGAAGATCAAGATCAAGATGATGATTTTGATGATGATGACGACGACGACGAAGAACATGAACCTATCACACTTGGTTTTGTTGATAAGCCCAAGAATAATTGGTCTCTTCGCCGTCAATATTTCCCAAGCAAAGCTGGAGGAGTCCCGGCTTGGCTTGACCCTCTGAATATACCATCAGGGGGATCATTTGTGTGTGACAATTGTGGAGACCCTTTACAATTCTTGCTTCAGGTTTATGCACCAACTGAGAAGGAAACTACATTTCACCGAATGTTGTTTGTTTTTATGTGTCCCTCCATGAAATGTCTTCTCAGGGATCAGCATGAGCAATGGAAACGCCATCCAGAGAAGCCATCTAAAAGTTTGAAGGTTTTCCGTTGTCAATTACCTCGCGCTAATCCATTTTACTCACCTGAATGCCCTCAGTATAATAAAAGCCACAAACCTGCTGGCAGTGGAGCCGCTCTTTGTGATTGGTGCGGCACCTGGAAAGGAGACAAGCTTTGTAGTGGTTGCAGACAAGCACGATATTGCTCTGAGAAACACCAGGTTATGAGTTGGCGCACAGGGCATAAAATTGCTTGCCAGCAGATGAAAGTTTCTTCACCTGTTTCTGGACCCAACAAAAGTGGAACCGCCTCCTTGGATTCTCATAAAGTTGGAAGCAAGAATCTATGGCCTGAATTTGAGATCACCATTGAAGATGAAAGTGACTATAAGAGAGACATGTCTGAGGAAAATACCTTAGCTAATTCCTTGATTTCAAGGAACAGGACTGATGACACAATGAATTCACTTTTGGATAACTTTCAGGGTGATGATGACAAAAAGAGTTGGGCCTCCTTCCAGCAATGCATTGCCAAGGCCCCAGAACAAGTGTTGAGGTATTATAGGAATACTAATGCTAAGCCAATATGGCCTGTTTCAAGTGATCTGCCATCAAATGCTGATATCCCTAGTTGTAGTTACTGCACCGGACCTATGTGTTGTGAATTTCAGATTTTGCCACAACTGTTGTATTACTTCGGCGTTGACAATGAAAATGGACTCTCTGGATTAGGCTTCAATTGTGGTGTATGCATGTGA
>Glyma12g07520.1 sequence type=predicted peptide gene model=Glyma12g07520 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MTYVNAVHVFSTFYSSPKHMDTDAIGDLVDKLKAIQNDNVEDQDQDDDFDDDDDDDEEHEPITLGFVDKPKNNWSLRRQYFPSKAGGVPAWLDPLNIPSGGSFVCDNCGDPLQFLLQVYAPTEKETTFHRMLFVFMCPSMKCLLRDQHEQWKRHPEKPSKSLKVFRCQLPRANPFYSPECPQYNKSHKPAGSGAALCDWCGTWKGDKLCSGCRQARYCSEKHQVMSWRTGHKIACQQMKVSSPVSGPNKSGTASLDSHKVGSKNLWPEFEITIEDESDYKRDMSEENTLANSLISRNRTDDTMNSLLDNFQGDDDKKSWASFQQCIAKAPEQVLRYYRNTNAKPIWPVSSDLPSNADIPSCSYCTGPMCCEFQILPQLLYYFGVDNENGLSGLGFNCGVCM*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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