SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G07980 | AT | Annotation by Michelle Graham. TAIR10: nuclear factor Y, subunit C10 | chr1:2473523-2474910 REVERSE LENGTH=206 | SoyBase | E_val: 2.00E-21 | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0043687 | GO-bp | Annotation by Michelle Graham. GO Biological Process: post-translational protein modification | SoyBase | N/A | ISS |
| GO:0045893 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0005622 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: intracellular | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| GO:0043565 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding | SoyBase | N/A | ISS |
| PTHR10252 | Panther | HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED | JGI | ISS | |
| PTHR10252:SF23 | Panther | HISTONE-LIKE TRANSCRIPTION FACTOR (CBF/NF-Y) FAMIL | JGI | ISS | |
| PF00808 | PFAM | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | JGI | ISS | |
| UniRef100_G7JPE7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: DNA polymerase epsilon subunit n=1 Tax=Medicago truncatula RepID=G7JPE7_MEDTR | SoyBase | E_val: 2.00E-45 | ISS |
| UniRef100_I1LQX2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LQX2_SOYBN | SoyBase | E_val: 4.00E-153 | ISS |
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Glyma12g07390 not represented in the dataset |
Glyma12g07390 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma11g20740 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.12g069100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma12g07390.2 sequence type=transcript gene model=Glyma12g07390 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AATTCCCTTGAACAGATTAGGAAAAGGTAAATGGGCCCAATTTCCAGCCCAAGCTCAGCTATAAGACTTTGAATTTCGAACCGAGTGTGAGCACGCTTCTTCTTGGAGACCTGCTTCCGACGGACGCTGAAAGTGAAACGCAAAATCCCGTGACGGAGTGCTTCCACTGCACTGTCATACAATGGCTTCCTCCAACACTCCCAAACCCGAAAATAAGAAGAGTACCAAAAAATCCGAAATCTCCAAAGCCGAAAAGAAGAAAACCAAAAACGCTGAAATCCCCAAAACCGATGGCAAAACGAAGAAGAACAAAGAAATCTCACAAGAGGAGAACAAGAAGAAGATTAAGAAGGCCAAGCTCAGCAACGGCACTTCAAAACAGCGAGACGAGGGATCCAAAAAGGGAGTAGCAGCAGAAGGAAACGGAGAAGAGGCGAAAATGAACGTGTTTCCGATGAATCGCATCAGGACGATGATTAAGGGCGAAGATCCCGAAATGCGTGTTTCTCAGGAAGCATTGTTTGCCATCAACAACACTGTGGAAAAGTTCCTTGAGCAGTTCACGCAGGACGCTTATGCCTTTTGTGCTCAGGACCGCAAGAAATGCCTCAGCTATGATCACCTAGCACATGTTGTAAGTAAGCAAAGGAGATATGACTTTCTCTCTGATTTTGTTCCTGAGAGAGTAAAAGCTGAGGATGCATTAAGAGAGAGAAGTGCAGCAGGAAAAGGAGGAAGTTAAAAAATCTAAAGCAAGCTAGTGGAGAATATAAGCTTATACTTTATTTAATCATGTAACATTTTGTAATGGAAACATGCATCATGATGAGTAATGCTGTACTTTAAGTTTCCATATTGTATTTATTTTAGTAATCCTATTCCCGTAAGTGTATATGATTTTTCAGTGACTATGCATGTGCTTGACTCTGCTTGGGTAGAGCATGGTGATGGTGTCAAATTTCTTATGTTGAAAATCTGAAGTTAATTTTCCCAT
>Glyma12g07390.1 sequence type=CDS gene model=Glyma12g07390 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTTCCTCCAACACTCCCAAACCCGAAAATAAGAAGAGTACCAAAAAATCCGAAATCTCCAAAGCCGAAAAGAAGAAAACCAAAAACGCTGAAATCCCCAAAACCGATGGCAAAACGAAGAAGAACAAAGAAATCTCACAAGAGGAGAACAAGAAGAAGATTAAGAAGGCCAAGCTCAGCAACGGCACTTCAAAACAGCGAGACGAGGGATCCAAAAAGGGAGTAGCAGCAGAAGGAAACGGAGAAGAGGCGAAAATGAACGTGTTTCCGATGAATCGCATCAGGACGATGATTAAGGGCGAAGATCCCGAAATGCGTGTTTCTCAGGAAGCATTGTTTGCCATCAACAACACTGTGGTAGGTTTTCTATTCCTTGCGTCTTCTTCTCCTCTTTTTCGATGTCTCTATCCTTCTTCGTTTTCCTCCTTTTCATTGCAGGAAAAGTTCCTTGAGCAGTTCACGCAGGACGCTTATGCCTTTTGTGCTCAGGACCGCAAGAAATGCCTCAGCTATGATCACCTAGCACATGTTGTAAGTAAGCAAAGGAGATATGACTTTCTCTCTGATTTTGTTCCTGAGAGAGTAAAAGCTGAGGATGCATTAAGAGAGAGAAGTGCAGCAGGAAAAGGAGGAAGTTAA >Glyma12g07390.2 sequence type=CDS gene model=Glyma12g07390 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTTCCTCCAACACTCCCAAACCCGAAAATAAGAAGAGTACCAAAAAATCCGAAATCTCCAAAGCCGAAAAGAAGAAAACCAAAAACGCTGAAATCCCCAAAACCGATGGCAAAACGAAGAAGAACAAAGAAATCTCACAAGAGGAGAACAAGAAGAAGATTAAGAAGGCCAAGCTCAGCAACGGCACTTCAAAACAGCGAGACGAGGGATCCAAAAAGGGAGTAGCAGCAGAAGGAAACGGAGAAGAGGCGAAAATGAACGTGTTTCCGATGAATCGCATCAGGACGATGATTAAGGGCGAAGATCCCGAAATGCGTGTTTCTCAGGAAGCATTGTTTGCCATCAACAACACTGTGGAAAAGTTCCTTGAGCAGTTCACGCAGGACGCTTATGCCTTTTGTGCTCAGGACCGCAAGAAATGCCTCAGCTATGATCACCTAGCACATGTTGTAAGTAAGCAAAGGAGATATGACTTTCTCTCTGATTTTGTTCCTGAGAGAGTAAAAGCTGAGGATGCATTAAGAGAGAGAAGTGCAGCAGGAAAAGGAGGAAGTTAA
>Glyma12g07390.1 sequence type=predicted peptide gene model=Glyma12g07390 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASSNTPKPENKKSTKKSEISKAEKKKTKNAEIPKTDGKTKKNKEISQEENKKKIKKAKLSNGTSKQRDEGSKKGVAAEGNGEEAKMNVFPMNRIRTMIKGEDPEMRVSQEALFAINNTVVGFLFLASSSPLFRCLYPSSFSSFSLQEKFLEQFTQDAYAFCAQDRKKCLSYDHLAHVVSKQRRYDFLSDFVPERVKAEDALRERSAAGKGGS* >Glyma12g07390.2 sequence type=predicted peptide gene model=Glyma12g07390 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASSNTPKPENKKSTKKSEISKAEKKKTKNAEIPKTDGKTKKNKEISQEENKKKIKKAKLSNGTSKQRDEGSKKGVAAEGNGEEAKMNVFPMNRIRTMIKGEDPEMRVSQEALFAINNTVEKFLEQFTQDAYAFCAQDRKKCLSYDHLAHVVSKQRRYDFLSDFVPERVKAEDALRERSAAGKGGS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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