Glyma12g07110 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma12g07110): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma12g07110): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma12g07110

Feature Type:	gene_model
Chromosome:	Gm12
Start:	4857010
stop:	4858735
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g07110

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G59780	AT	Annotation by Michelle Graham. TAIR10: myb domain protein 59 \| chr5:24082425-24083350 REVERSE LENGTH=235	SoyBase	E_val: 1.00E-72	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0009723	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to ethylene stimulus	SoyBase	N/A	ISS
GO:0009733	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus	SoyBase	N/A	ISS
GO:0009737	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus	SoyBase	N/A	ISS
GO:0009739	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to gibberellin stimulus	SoyBase	N/A	ISS
GO:0009751	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salicylic acid stimulus	SoyBase	N/A	ISS
GO:0009753	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus	SoyBase	N/A	ISS
GO:0010200	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to chitin	SoyBase	N/A	ISS
GO:0046686	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cadmium ion	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PTHR10641	Panther	MYB-RELATED	JGI		ISS
PF00249	PFAM	Myb-like DNA-binding domain	JGI		ISS
UniRef100_G7JTP4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: MYB transcription factor n=4 Tax=Medicago truncatula RepID=G7JTP4_MEDTR	SoyBase	E_val: 1.00E-108	ISS
UniRef100_I1LQT6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1LQT6_SOYBN	SoyBase	E_val: 7.00E-141	ISS

Expression Patterns of Glyma12g07110

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma12g07110 not represented in the dataset	Glyma12g07110 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g07110

Paralog	Evidence	Comments
Glyma11g15180	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g07110 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g066000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g07110

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma12g07110

Limit To All Plant Sequences

>Glyma12g07110.4   sequence type=transcript   gene model=Glyma12g07110   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CATGCGTGCACCACATGAACTGTGGATATGCAAGCTTAATTGCTTATTATAAAAATACACCTCATAGAATGTGAATAGTGAGAAAACCACATATAAATACCACTAGTACCAACATAGGTCTCCGTAAGTCTATCAAGTGAAGAATTAAAGTTAGAATAATATTCCCTACAATTAGCAGAAAAAATGGTTCAGCAAGAAATCCGAAGGGGTCCCTGGACAGAACAGGAGGACTACAAATTGGTGTATTTTGTTGGCATGTTCGGAGATCGTAGATGGGACTTTATAGCAAAGGTATCAGGTTTGAAGGTGGAGGGAGACTGTAAATAAAATAGGTTTGAATAGAACAGGTAAGAGTTGCAGATTACGGTGGGTTAATTACCTCCACCCCGATCTCAAACGAGGGAAGCTCACACCCCAAGAACAACACCTCGTCATGGACCTTCATTCCAAATGGGGAAATAGATGGTCAAGAATTGCTCGCAAGCTACCAGGGCGCACTGACAATGAGATTAAGAATTATTGGAGGACTCACATGAGAAAGAAAAAGGCTCTGGAGAAAAAGCATGCATCAGCATCAGCATCATCACCTGTTTCTTCTAGTTGTCAATCTTCACTATCTTCAAACAACCATGTTGTGGATTCACATGCTTCCAAAGAGAGCTTTTATGACACAGGTGGATATGATGACATGATGATGGGGTTAATTGGTGGTGAAAAGGGGTACTCTATGGATGATATATGGAAAGATATTGTTTTGTCAGGAGAAGAGAACAGCATTTATAACAACAATAATCTGCAACCTGTGTATGAAGAAGGGCATAGTGAAGAGGGCTGCAACTTCTCTTGTCCTCCACCAATGATGATTATGCCTTCTCCACCATCATGGGATCAGTACAACATTTCTTCTCAACCCCTCTGGGTGATGGATGAAGAAGAAAGTAACAAGATGTTATTCCCTACACTAAGTGACCAATATTTTTCTCACTATGAACAAGGGAACGAATTTCTGACCGGCTAATTAGGAGATTCTTTTTTTTCTTTCTCTTTTCAATTATCAATATTTTGTTCTTATGTGTGCCATCTGTCACAATAAGAAGGCTTAAGTCTTAACCTGTACAGCATAGTATCTTTGAGCTTTCGCCATGGTCCTCCTCCATAGTGTGACACAGCTGTAATCGATCTCAAATGTCACTGTAGTCTATGTCAATGTGTTTGTGGTTTTACTTTAAAGAAAAATCCAATGGGGAGTGGTCATGTTATGAATTATGTAAAATACTATACATCAAGCACTTGTGCAAATTTAAGTTTTAATCTGATTTCGATGCCTAGCTATCAATTATAGCACTTTCATTTCAATTATATTATATTAATATCAGCCACTAGCTACTAATGCGTGAATAATCTATACACACC

>Glyma12g07110.5   sequence type=transcript   gene model=Glyma12g07110   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CATGCGTGCACCACATGAACTGTGGATATGCAAGCTTAATTGCTTATTATAAAAATACACCTCATAGAATGTGAATAGTGAGAAAACCACATATAAATACCACTAGTACCAACATAGGTCTCCGTAAGTCTATCAAGTGAAGAATTAAAGTTAGAATAATATTCCCTACAATTAGCAGAAAAAATGGTTCAGCAAGAAATCCGAAGGGGTCCCTGGACAGAACAGGAGGACTACAAATTGGTGTATTTTGTTGGCATGTTCGGAGATCGTAGATGGGACTTTATAGCAAAGGTATCAGGTTTGAAGGTGGAGGGAGACTGTAAATAAAATAGGTATGAATATTTGGACATGCTAAGTTATACTATGAAGCACCCTTTAACCACCTCACTTTGTTGTAGGTTTGAATAGAACAGGTAAGAGTTGCAGATTACGGTGGGTTAATTACCTCCACCCCGATCTCAAACGAGGGAAGCTCACACCCCAAGAACAACACCTCGTCATGGACCTTCATTCCAAATGGGGAAATAGATGGTCAAGAATTGCTCGCAAGCTACCAGGGCGCACTGACAATGAGATTAAGAATTATTGGAGGACTCACATGAGAAAGAAAAAGGCTCTGGAGAAAAAGCATGCATCAGCATCAGCATCATCACCTGTTTCTTCTAGTTGTCAATCTTCACTATCTTCAAACAACCATGTTGTGGATTCACATGCTTCCAAAGAGAGCTTTTATGACACAGGTGGATATGATGACATGATGATGGGGTTAATTGGTGGTGAAAAGGGGTACTCTATGGATGATATATGGAAAGATATTGTTTTGTCAGGAGAAGAGAACAGCATTTATAACAACAATAATCTGCAACCTGTGTATGAAGAAGGGCATAGTGAAGAGGGCTGCAACTTCTCTTGTCCTCCACCAATGATGATTATGCCTTCTCCACCATCATGGGATCAGTACAACATTTCTTCTCAACCCCTCTGGGTGATGGATGAAGAAGAAAGTAACAAGATGTTATTCCCTACACTAAGTGACCAATATTTTTCTCACTATGAACAAGGGAACGAATTTCTGACCGGCTAATTAGGAGATTCTTTTTTTTCTTTCTCTTTTCAATTATCAATATTTTGTTCTTATGTGTGCCATCTGTCACAATAAGAAGGCTTAAGTCTTAACCTGTACAGCATAGTATCTTTGAGCTTTCGCCATGGTCCTCCTCCATAGTGTGACACAGCTGTAATCGATCTCAAATGTCACTGTAGTCTATGTCAATGTGTTTGTGGTTTTACTTTAAAGAAAAATCCAATGGGGAGTGGTCATGTTATGAATTATGTAAAATACTATACATCAAGCACTTGTGCAAATTTAAGTTTTAATCTGATTTCGATGCCTAGCTATCAATTATAGCACTTTCATTTCAATTATATTATATTAATATCAGCCACTAGCTACTAATGCGTGAATAATCTATACACACC

>Glyma12g07110.6   sequence type=transcript   gene model=Glyma12g07110   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CATGCGTGCACCACATGAACTGTGGATATGCAAGCTTAATTGCTTATTATAAAAATACACCTCATAGAATGTGAATAGTGAGAAAACCACATATAAATACCACTAGTACCAACATAGGTCTCCGTAAGTCTATCAAGTGAAGAATTAAAGTTAGAATAATATTCCCTACAATTAGCAGAAAAAATGGTTCAGCAAGAAATCCGAAGGGGTCCCTGGACAGAACAGGAGGACTACAAATTGGTGTATTTTGTTGGCATGTTCGGAGATCGTAGATGGGACTTTATAGCAAAGGTATCAGGTTTGAAGGTGGAGGGAGACTGTAAATAAAATAGATGGTCAAGAATTGCTCGCAAGCTACCAGGGCGCACTGACAATGAGATTAAGAATTATTGGAGGACTCACATGAGAAAGAAAAAGGCTCTGGAGAAAAAGCATGCATCAGCATCAGCATCATCACCTGTTTCTTCTAGTTGTCAATCTTCACTATCTTCAAACAACCATGTTGTGGATTCACATGCTTCCAAAGAGAGCTTTTATGACACAGGTGGATATGATGACATGATGATGGGGTTAATTGGTGGTGAAAAGGGGTACTCTATGGATGATATATGGAAAGATATTGTTTTGTCAGGAGAAGAGAACAGCATTTATAACAACAATAATCTGCAACCTGTGTATGAAGAAGGGCATAGTGAAGAGGGCTGCAACTTCTCTTGTCCTCCACCAATGATGATTATGCCTTCTCCACCATCATGGGATCAGTACAACATTTCTTCTCAACCCCTCTGGGTGATGGATGAAGAAGAAAGTAACAAGATGTTATTCCCTACACTAAGTGACCAATATTTTTCTCACTATGAACAAGGGAACGAATTTCTGACCGGCTAATTAGGAGATTCTTTTTTTTCTTTCTCTTTTCAATTATCAATATTTTGTTCTTATGTGTGCCATCTGTCACAATAAGAAGGCTTAAGTCTTAACCTGTACAGCATAGTATCTTTGAGCTTTCGCCATGGTCCTCCTCCATAGTGTGACACAGCTGTAATCGATCTCAAATGTCACTGTAGTCTATGTCAATGTGTTTGTGGTTTTACTTTAAAGAAAAATCCAATGGGGAGTGGTCATGTTATGAATTATGTAAAATACTATACATCAAGCACTTGTGCAAATTTAAGTTTTAATCTGATTTCGATGCCTAGCTATCAATTATAGCACTTTCATTTCAATTATATTATATTAATATCAGCCACTAGCTACTAATGCGTGAATAATCTATACACACC

Coding sequences of Glyma12g07110

Limit To All Plant Sequences

>Glyma12g07110.3   sequence type=CDS   gene model=Glyma12g07110   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTCAGCAAGAAATCCGAAGGGGTCCCTGGACAGAACAGGAGGACTACAAATTGGTGTATTTTGTTGGCATGTTCGGAGATCGTAGATGGGACTTTATAGCAAAGGTATCAGGTTTGAAGGTGGAGGGAGACTGTTTGAATAGAACAGGTAAGAGTTGCAGATTACGGTGGGTTAATTACCTCCACCCCGATCTCAAACGAGGGAAGCTCACACCCCAAGAACAACACCTCGTCATGGACCTTCATTCCAAATGGGGAAATAGATGGTCAAGAATTGCTCGCAAGCTACCAGGGCGCACTGACAATGAGATTAAGAATTATTGGAGGACTCACATGAGAAAGAAAAAGGCTCTGGAGAAAAAGCATGCATCAGCATCAGCATCATCACCTGTTTCTTCTAGTTGTCAATCTTCACTATCTTCAAACAACCATGTTGTGGATTCACATGCTTCCAAAGAGAGCTTTTATGACACAGGTGGATATGATGACATGATGATGGGGTTAATTGGTGGTGAAAAGGGGTACTCTATGGATGATATATGGAAAGATATTGTTTTGTCAGGAGAAGAGAACAGCATTTATAACAACAATAATCTGCAACCTGTGTATGAAGAAGGGCATAGTGAAGAGGGCTGCAACTTCTCTTGTCCTCCACCAATGATGATTATGCCTTCTCCACCATCATGGGATCAGTACAACATTTCTTCTCAACCCCTCTGGGTGATGGATGAAGAAGAAAGTAACAAGATGTTATTCCCTACACTAAGTGACCAATATTTTTCTCACTATGAACAAGGGAACGAATTTCTGACCGGCTAA

>Glyma12g07110.4   sequence type=CDS   gene model=Glyma12g07110   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACCTTCATTCCAAATGGGGAAATAGATGGTCAAGAATTGCTCGCAAGCTACCAGGGCGCACTGACAATGAGATTAAGAATTATTGGAGGACTCACATGAGAAAGAAAAAGGCTCTGGAGAAAAAGCATGCATCAGCATCAGCATCATCACCTGTTTCTTCTAGTTGTCAATCTTCACTATCTTCAAACAACCATGTTGTGGATTCACATGCTTCCAAAGAGAGCTTTTATGACACAGGTGGATATGATGACATGATGATGGGGTTAATTGGTGGTGAAAAGGGGTACTCTATGGATGATATATGGAAAGATATTGTTTTGTCAGGAGAAGAGAACAGCATTTATAACAACAATAATCTGCAACCTGTGTATGAAGAAGGGCATAGTGAAGAGGGCTGCAACTTCTCTTGTCCTCCACCAATGATGATTATGCCTTCTCCACCATCATGGGATCAGTACAACATTTCTTCTCAACCCCTCTGGGTGATGGATGAAGAAGAAAGTAACAAGATGTTATTCCCTACACTAAGTGACCAATATTTTTCTCACTATGAACAAGGGAACGAATTTCTGACCGGCTAA

>Glyma12g07110.5   sequence type=CDS   gene model=Glyma12g07110   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACCTTCATTCCAAATGGGGAAATAGATGGTCAAGAATTGCTCGCAAGCTACCAGGGCGCACTGACAATGAGATTAAGAATTATTGGAGGACTCACATGAGAAAGAAAAAGGCTCTGGAGAAAAAGCATGCATCAGCATCAGCATCATCACCTGTTTCTTCTAGTTGTCAATCTTCACTATCTTCAAACAACCATGTTGTGGATTCACATGCTTCCAAAGAGAGCTTTTATGACACAGGTGGATATGATGACATGATGATGGGGTTAATTGGTGGTGAAAAGGGGTACTCTATGGATGATATATGGAAAGATATTGTTTTGTCAGGAGAAGAGAACAGCATTTATAACAACAATAATCTGCAACCTGTGTATGAAGAAGGGCATAGTGAAGAGGGCTGCAACTTCTCTTGTCCTCCACCAATGATGATTATGCCTTCTCCACCATCATGGGATCAGTACAACATTTCTTCTCAACCCCTCTGGGTGATGGATGAAGAAGAAAGTAACAAGATGTTATTCCCTACACTAAGTGACCAATATTTTTCTCACTATGAACAAGGGAACGAATTTCTGACCGGCTAA

>Glyma12g07110.6   sequence type=CDS   gene model=Glyma12g07110   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGAAAGAAAAAGGCTCTGGAGAAAAAGCATGCATCAGCATCAGCATCATCACCTGTTTCTTCTAGTTGTCAATCTTCACTATCTTCAAACAACCATGTTGTGGATTCACATGCTTCCAAAGAGAGCTTTTATGACACAGGTGGATATGATGACATGATGATGGGGTTAATTGGTGGTGAAAAGGGGTACTCTATGGATGATATATGGAAAGATATTGTTTTGTCAGGAGAAGAGAACAGCATTTATAACAACAATAATCTGCAACCTGTGTATGAAGAAGGGCATAGTGAAGAGGGCTGCAACTTCTCTTGTCCTCCACCAATGATGATTATGCCTTCTCCACCATCATGGGATCAGTACAACATTTCTTCTCAACCCCTCTGGGTGATGGATGAAGAAGAAAGTAACAAGATGTTATTCCCTACACTAAGTGACCAATATTTTTCTCACTATGAACAAGGGAACGAATTTCTGACCGGCTAA

Predicted protein sequences of Glyma12g07110

Limit To All Plant Sequences

>Glyma12g07110.3   sequence type=predicted peptide   gene model=Glyma12g07110   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVQQEIRRGPWTEQEDYKLVYFVGMFGDRRWDFIAKVSGLKVEGDCLNRTGKSCRLRWVNYLHPDLKRGKLTPQEQHLVMDLHSKWGNRWSRIARKLPGRTDNEIKNYWRTHMRKKKALEKKHASASASSPVSSSCQSSLSSNNHVVDSHASKESFYDTGGYDDMMMGLIGGEKGYSMDDIWKDIVLSGEENSIYNNNNLQPVYEEGHSEEGCNFSCPPPMMIMPSPPSWDQYNISSQPLWVMDEEESNKMLFPTLSDQYFSHYEQGNEFLTG*

>Glyma12g07110.4   sequence type=predicted peptide   gene model=Glyma12g07110   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDLHSKWGNRWSRIARKLPGRTDNEIKNYWRTHMRKKKALEKKHASASASSPVSSSCQSSLSSNNHVVDSHASKESFYDTGGYDDMMMGLIGGEKGYSMDDIWKDIVLSGEENSIYNNNNLQPVYEEGHSEEGCNFSCPPPMMIMPSPPSWDQYNISSQPLWVMDEEESNKMLFPTLSDQYFSHYEQGNEFLTG*

>Glyma12g07110.5   sequence type=predicted peptide   gene model=Glyma12g07110   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDLHSKWGNRWSRIARKLPGRTDNEIKNYWRTHMRKKKALEKKHASASASSPVSSSCQSSLSSNNHVVDSHASKESFYDTGGYDDMMMGLIGGEKGYSMDDIWKDIVLSGEENSIYNNNNLQPVYEEGHSEEGCNFSCPPPMMIMPSPPSWDQYNISSQPLWVMDEEESNKMLFPTLSDQYFSHYEQGNEFLTG*

>Glyma12g07110.6   sequence type=predicted peptide   gene model=Glyma12g07110   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRKKKALEKKHASASASSPVSSSCQSSLSSNNHVVDSHASKESFYDTGGYDDMMMGLIGGEKGYSMDDIWKDIVLSGEENSIYNNNNLQPVYEEGHSEEGCNFSCPPPMMIMPSPPSWDQYNISSQPLWVMDEEESNKMLFPTLSDQYFSHYEQGNEFLTG*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain