Glyma12g07040 - SoyBase

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Report for Sequence Feature Glyma12g07040

Feature Type:	gene_model
Chromosome:	Gm12
Start:	4800659
stop:	4801390
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g07040

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G45980	AT	Annotation by Michelle Graham. TAIR10: Histone superfamily protein \| chr3:16897492-16897944 REVERSE LENGTH=150	SoyBase	E_val: 2.00E-81	ISS
GO:0006334	GO-bp	Annotation by Michelle Graham. GO Biological Process: nucleosome assembly	SoyBase	N/A	ISS
GO:0007020	GO-bp	Annotation by Michelle Graham. GO Biological Process: microtubule nucleation	SoyBase	N/A	ISS
GO:0000786	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleosome	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005730	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleolus	SoyBase	N/A	ISS
GO:0009534	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
KOG1744	KOG	Histone H2B	JGI		ISS
PTHR23428	Panther	HISTONE H2B	JGI		ISS
PF00125	PFAM	Core histone H2A/H2B/H3/H4	JGI		ISS
UniRef100_I1LQT0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Histone H2B n=5 Tax=core eudicotyledons RepID=I1LQT0_SOYBN	SoyBase	E_val: 1.00E-98	ISS
UniRef100_UPI0000E646E3	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0000E646E3 related cluster n=1 Tax=unknown RepID=UPI0000E646E3	SoyBase	E_val: 2.00E-99	ISS

Expression Patterns of Glyma12g07040

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma12g07040 not represented in the dataset	Glyma12g07040 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma12g07040 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g065200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g07040

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma12g07040

Limit To All Plant Sequences

>Glyma12g07040.1   sequence type=CDS   gene model=Glyma12g07040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCACCTAAGGCAGAGAAGAAGCCAGCGGAGAAGAAGCCCGCGGAGGAGAAGAAGTCGACGGTGGGAGACAAGGCTCCGGCGGAGAAGAAGCCGAAGGCCGGAAAGAAGCTTCCGAAGGAGGGAGGAGCCGGCGGAGAAGGGGGGAAGAAGAAAAAGAGGAACAAGAAGAGCGTGGAGACGTACAAGATATACATATTCAAGGTACTGAAGCAGGTCCACCCTGACATTGGTATCTCAAGCAAGGCCATGGGAATCATGAACAGCTTCATCAACGACATCTTCGAGAAGCTTGCTCAGGAATCTTCCAGACTTGCCCGCTACAACAAGAAGCCCACCATCACTTCAAGGGAAATCCAGACCGCGGTCAGGCTTGTGCTTCCCGGTGAATTGGCCAAGCACGCCGTTTCTGAGGGTACCAAGGCCGTCACCAAGTTCACCAGCTCATGA

Predicted protein sequences of Glyma12g07040

Limit To All Plant Sequences

>Glyma12g07040.1   sequence type=predicted peptide   gene model=Glyma12g07040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAPKAEKKPAEKKPAEEKKSTVGDKAPAEKKPKAGKKLPKEGGAGGEGGKKKKRNKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS*

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