|
A newer version of this gene model can be found here:
Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
---|---|---|---|---|---|
AT4G13850 | AT | Annotation by Michelle Graham. TAIR10: glycine-rich RNA-binding protein 2 | chr4:8021314-8022065 FORWARD LENGTH=144 | SoyBase | E_val: 3.00E-23 | ISS |
GO:0006364 | GO-bp | Annotation by Michelle Graham. GO Biological Process: rRNA processing | SoyBase | N/A | ISS |
GO:0006970 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to osmotic stress | SoyBase | N/A | ISS |
GO:0009409 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cold | SoyBase | N/A | ISS |
GO:0009414 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to water deprivation | SoyBase | N/A | ISS |
GO:0009631 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cold acclimation | SoyBase | N/A | ISS |
GO:0009651 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salt stress | SoyBase | N/A | ISS |
GO:0009845 | GO-bp | Annotation by Michelle Graham. GO Biological Process: seed germination | SoyBase | N/A | ISS |
GO:0031564 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transcription antitermination | SoyBase | N/A | ISS |
GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
GO:0001072 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: RNA binding transcription antitermination factor activity | SoyBase | N/A | ISS |
GO:0003690 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: double-stranded DNA binding | SoyBase | N/A | ISS |
GO:0003697 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: single-stranded DNA binding | SoyBase | N/A | ISS |
GO:0003723 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: RNA binding | SoyBase | N/A | ISS |
GO:0005507 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: copper ion binding | SoyBase | N/A | ISS |
GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
PTHR24011 | Panther | FAMILY NOT NAMED | JGI | ISS | |
PTHR24011:SF259 | Panther | JGI | ISS | ||
PF00076 | PFAM | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | JGI | ISS | |
UniRef100_C6SZT2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SZT2_SOYBN | SoyBase | E_val: 5.00E-104 | ISS |
UniRef100_G7JUS2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Glycine-rich RNA-binding protein n=1 Tax=Medicago truncatula RepID=G7JUS2_MEDTR | SoyBase | E_val: 8.00E-45 | ISS |
Glyma12g07020 not represented in the dataset |
Glyma12g07020 not represented in the dataset |
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Corresponding Name | Annotation Version | Evidence | Comments |
---|---|---|---|
Glyma.12g065000 | Wm82.a2.v1 | IGC | As supplied by JGI |
Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma12g07020.1 sequence type=CDS gene model=Glyma12g07020 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTATGTGAAAACGGCTTGTGGTTTCACCCATAGCCTGCGGAAAATGCTTTATTGTGTTTCGGATATCAATTTAAAGTTCACAGTTATGCAAATAACCAGTGCATTAGTGAATGGCAGCGCTCTTCGTTTCCACTTACCTAGATTTCTATGTGTGCGTCATCATTCATCAACCAAGTTGTTTGTCACAGGGCTTTCCTATGATACCAATGAACCGATTCTGAGAGATGCCTTTGGGCAACATGGTGAAATCATTGAAGTTAAAGTAATATGTGATCATGTGACTGGGAAATCAAGAGGTTATGGATTTGTGCGGTTCGTTTCTGAAACTACAGCTGCTGCAGCTCGCAAAGAAATGAATGGCCAGATACTGGATGGAAGACGCATTCGGGTGAGTTATGCACACAAAGGCGAGCGACTAAGTCTGCCAAACAATTCATAA
>Glyma12g07020.1 sequence type=predicted peptide gene model=Glyma12g07020 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MYVKTACGFTHSLRKMLYCVSDINLKFTVMQITSALVNGSALRFHLPRFLCVRHHSSTKLFVTGLSYDTNEPILRDAFGQHGEIIEVKVICDHVTGKSRGYGFVRFVSETTAAAARKEMNGQILDGRRIRVSYAHKGERLSLPNNS*
Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||