SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G46440 | AT | Annotation by Michelle Graham. TAIR10: UDP-XYL synthase 5 | chr3:17089268-17091611 REVERSE LENGTH=341 | SoyBase | E_val: 0 | ISS |
| GO:0009225 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nucleotide-sugar metabolic process | SoyBase | N/A | ISS |
| GO:0009744 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to sucrose stimulus | SoyBase | N/A | ISS |
| GO:0009749 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to glucose stimulus | SoyBase | N/A | ISS |
| GO:0009750 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to fructose stimulus | SoyBase | N/A | ISS |
| GO:0042732 | GO-bp | Annotation by Michelle Graham. GO Biological Process: D-xylose metabolic process | SoyBase | N/A | ISS |
| GO:0044237 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular metabolic process | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0048040 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: UDP-glucuronate decarboxylase activity | SoyBase | N/A | ISS |
| GO:0050662 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: coenzyme binding | SoyBase | N/A | ISS |
| KOG1429 | KOG | dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase | JGI | ISS | |
| PTHR10366 | Panther | NAD DEPENDENT EPIMERASE/DEHYDRATASE | JGI | ISS | |
| PTHR10366:SF35 | Panther | gb def: udp-glucose 4-epimerase [bacillus halodurans] | JGI | ISS | |
| PF01370 | PFAM | NAD dependent epimerase/dehydratase family | JGI | ISS | |
| UniRef100_I1LQS4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LQS4_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q9AV98 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: UDP-D-glucuronate carboxy-lyase n=1 Tax=Pisum sativum RepID=Q9AV98_PEA | SoyBase | E_val: 0 | ISS |
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Glyma12g06990 not represented in the dataset |
Glyma12g06990 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma11g15020 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.12g064700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma12g06990.1 sequence type=CDS gene model=Glyma12g06990 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAGGGAATTCTTCTGATGTACTGTCGCCGAAGCAACCTCCCTTGCCATCTCCCTTGCGTTTCTCCAAATTCTTTCAGTCTAACATGAGAATTTTGATTACGGGAGGAGCTGGATTCATTGGTTCTCACCTAGTCGATAGATTGATGGAAAATGAAAAAAATGAGGTCATTGTTGCTGATAACTACTTCACTGGATCAAAGGACAACCTCAAAAAATGGATTGGTCATCCAAGATTCGAGCTTATTCGTCATGATGTCACTGAACCTTTGACGATTGAGGTTGATCAGATCTACCATCTTGCGTGCCCTGCATCTCCTATTTTCTACAAATATAATCCCGTGAAGACAATAAAGACAAATGTGATTGGTACACTGAACATGCTTGGGCTTGCCAAGCGAGTTGGGGCAAGGATTTTACTCACATCAACATCTGAGGTATATGGGGATCCTCTTGTGCATCCCCAACCTGAAAGCTATTGGGGCAATGTGAACCCTATTGGAGTTCGTAGTTGCTATGATGAGGGGAAACGTGTGGCTGAAACTTTGATGTTTGATTATCATAGGCAGCATGGAATAGAAATACGTGTTGCAAGAATCTTTAACACATATGGGCCGCGCATGAATATTGATGATGGACGTGTTGTCAGCAACTTCATTGCTCAAGCAATTCGTGGTGAACCCTTGACAGTCCAGTCTCCAGGAACACAAACTCGCAGTTTCTGCTATGTCTCTGATCTGGTTGATGGACTTATCCGTCTCATGGAAGGATCCGACACTGGACCAATCAACCTTGGAAATCCAGGTGAATTTACAATGCTAGAACTTGCTGAGACAGTGAAGGAGCTTATTAATCCAGATGTGGAGATAAAGGTAGTGGAGAACACTCCTGATGATCCGCGACAGAGAAAACCAATCATAACAAAAGCAATGGAATTGCTTGGCTGGGAACCAAAGGTTAAGCTGCGAGATGGGCTTCCTCTTATGGAAGAGGATTTTCGTTTGAGGCTTGGATTTGACAAAAAAAATTAA
>Glyma12g06990.1 sequence type=predicted peptide gene model=Glyma12g06990 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAGNSSDVLSPKQPPLPSPLRFSKFFQSNMRILITGGAGFIGSHLVDRLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLTIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQPESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRVARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQSPGTQTRSFCYVSDLVDGLIRLMEGSDTGPINLGNPGEFTMLELAETVKELINPDVEIKVVENTPDDPRQRKPIITKAMELLGWEPKVKLRDGLPLMEEDFRLRLGFDKKN*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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