SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G28800 | AT | Annotation by Michelle Graham. TAIR10: 63 kDa inner membrane family protein | chr2:12356669-12359158 REVERSE LENGTH=462 | SoyBase | E_val: 0 | ISS |
| GO:0006364 | GO-bp | Annotation by Michelle Graham. GO Biological Process: rRNA processing | SoyBase | N/A | ISS |
| GO:0009902 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chloroplast relocation | SoyBase | N/A | ISS |
| GO:0010027 | GO-bp | Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization | SoyBase | N/A | ISS |
| GO:0010207 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photosystem II assembly | SoyBase | N/A | ISS |
| GO:0034660 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ncRNA metabolic process | SoyBase | N/A | ISS |
| GO:0035304 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of protein dephosphorylation | SoyBase | N/A | ISS |
| GO:0042744 | GO-bp | Annotation by Michelle Graham. GO Biological Process: hydrogen peroxide catabolic process | SoyBase | N/A | ISS |
| GO:0042793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transcription from plastid promoter | SoyBase | N/A | ISS |
| GO:0045038 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein import into chloroplast thylakoid membrane | SoyBase | N/A | ISS |
| GO:0045893 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0051205 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein insertion into membrane | SoyBase | N/A | ISS |
| GO:0090342 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of cell aging | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009534 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid | SoyBase | N/A | ISS |
| GO:0009535 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0015450 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | SoyBase | N/A | ISS |
| KOG1239 | KOG | Inner membrane protein translocase involved in respiratory chain assembly | JGI | ISS | |
| PTHR12428 | Panther | CYTOCHROME OXIDASE BIOGENESIS PROTEIN | JGI | ISS | |
| PTHR12428:SF12 | Panther | INNER MEMBRANE ALBINO3-LIKE PROTEIN 1, 2, CHLOROPLAST | JGI | ISS | |
| PF02096 | PFAM | 60Kd inner membrane protein | JGI | ISS | |
| UniRef100_I1LQR5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LQR5_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q9FY06 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Inner membrane protein PPF-1, chloroplastic n=1 Tax=Pisum sativum RepID=PPF1_PEA | SoyBase | E_val: 0 | ISS |
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Glyma12g06920 not represented in the dataset |
Glyma12g06920 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma11g14960 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.12g064100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma12g06920.2 sequence type=transcript gene model=Glyma12g06920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CTTGCACCTTGTCCTTGCCTCGCAAAAAAATGGGGATAATTCGTAAAATATTCATTCCCTCATCTCTAATCCGTTATGAGAAGCTGAACCTTCCTCTGCACAATCTCCTTCAAAAAGCTTCTCATCCATGGCGAAAACGCTCATTTCGTCTCCATCGTTCATCGGCACGCCGCTCCCCTCGCTCCCTCGCCACCACCTCCCCCACCGCACCAGGTTTGTCACTACCAAAGTCCACGTCAGCCTCCATGAAATTCCCCCTATTCAATCCTTAAGCCACTCCATTGACTTCGCCGGAATCGTTACCAGAGCCGAAGGCCTTCTCTACACGCTCGCCGATGCCGCAGTTGCGGCGGACCCTGCGGTTGCAGCGGACACTGCGGCTTCCACCACCGATGCTGCCGTACAGAAGAGCGGAGGTTGGTTCGGCTTCATCTCCGAAGCTATGGAGTTCGTTCTCAAGGTGTTGAAGGATGGTCTTTCTGCCGTGCATGTCCCTTATGCATATGGATTTGCTATCATATTGCTCACTGTTATAGTTAAGGCAGCGACGCTTCCCCTGACAAAGCAACAGGTTGAATCTACATTGGCTATGCAAAATCTTCAACCAAAAATTAAGGCCATTCAAGATAGATATGCTGGCAATCAAGAAAGAATACAACTTGAGACGTCAAGGCTATATCGGCAGGCTGGGGTTAACCCACTGGCAGGTTGTTTACCAACTTTGGCTACAATTCCAGTCTGGATTGGTCTCTACCAAGCTTTATCAAATGTGGCAAATGAGGGACTGCTAACCGAAGGTTTTCTTTGGATCCCCTCTTTGGGTGGTCCTACTACCATTGCTGCTAGACAAAGTGGAGCTGGAATCTCTTGGCTTTTTCCATTTGTGGACGGACATCCACCTTTGGGTTGGCAAGATACTGCAGCATATCTTGTTTTACCTATTCTTCTTGTCGTTTCTCAATACGTTTCAATGGAAATCATGAAACCACCTCAGACAGATCCTTCTCAAAAGAATCAACTTCTTATTTTAAAGTTTCTTCCACTCATGATTGGCTACTTCTCATTATCTGTCCCATCTGGACTAACAATTTACTGGTTTATAAACAATGTCCTGAGCACAGCTCAACAAGTATGGTTGCGAAAATTGGGAGGTGCAAAGCCTGTTGTGAATGAAAATGCTGGTGGGATTATTACTGCAGGACGTGCTAAAAGATCAGATTCGCAGCTAGCAAGGAATGGTGAAAGGTTTAAGCAGTTAAAGGAAGAGGAAAAGAAGAAAAAGGTAAGCAAGGCACTGCCAGTGGAAGAAGTTCAGTCACTGGCTTCTGTTTCTGCTTCTGATGATGGCTCAGATACAGAAAGTGACAATAAGGAAGATGCAGAAGAAGCATACGCTTCTAAAGTTGGCGAAGAGGTTCAAAATTATTCTAGGGAAAGAAGAAGCAAGCGTTCGAAGCGGAAGCGTGCTGTATAAAGGACCGCATACGATTAGTTTATAGTGAGTTTTGTATATCTCAGATTATAGCATTTTTGGGTTGGCTATTAATTAAATATATGTATCTATACTCGGCAAAATATCTTTGTTAAGTTCCACATGTTAGCTAAAGCAATTTGTCTTGTGACGTTTAATTTCATTAAGATGTATCCCCCCTTAAAACTAGGAGTATAAAAACTTCTATTCCCTCCTTTCCAAAATAATAATTAGTTTTAGCTTTTTTTTTTCTTTCTATAAATAGTCTTTTTTTTT
>Glyma12g06920.1 sequence type=CDS gene model=Glyma12g06920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGAAAACGCTCATTTCGTCTCCATCGTTCATCGGCACGCCGCTCCCCTCGCTCCCTCGCCACCACCTCCCCCACCGCACCAGGTTTGTCACTACCAAAGTCCACGTCAGCCTCCATGAAATTCCCCCTATTCAATCCTTAAGCCACTCCATTGACTTCGCCGGAATCGTTACCAGAGCCGAAGGCCTTCTCTACACGCTCGCCGATGCCGCAGTTGCGGCGGACCCTGCGGTTGCAGCGGACACTGCGGCTTCCACCACCGATGCTGCCGTACAGAAGAGCGGAGGTTGGTTCGGCTTCATCTCCGAAGCTATGGAGTTCGTTCTCAAGGTGTTGAAGGATGGTCTTTCTGCCGTGCATGTCCCTTATGCATATGGATTTGCTATCATATTGCTCACTGTTATAGTTAAGGCAGCGACGCTTCCCCTGACAAAGCAACAGGTTGAATCTACATTGGCTATGCAAAATCTTCAACCAAAAATTAAGGCCATTCAAGATAGATATGCTGGCAATCAAGAAAGAATACAACTTGAGACGTCAAGGCTATATCGGCAGGCTGGGGTTAACCCACTGGCAGGTTGTTTACCAACTTTGGCTACAATTCCAGTCTGGATTGGTCTCTACCAAGCTTTATCAAATGTGGCAAATGAGGGACTGCTAACCGAAGGTTTTCTTTGGATCCCCTCTTTGGGTGGTCCTACTACCATTGCTGCTAGACAAAGTGGAGCTGGAATCTCTTGGCTTTTTCCATTTGTGGACGGACATCCACCTTTGGGTTGGCAAGATACTGCAGCATATCTTGTTTTACCTATTCTTCTTGTCGTTTCTCAATACGTTTCAATGGAAATCATGAAACCACCTCAGACAGATCCTTCTCAAAAGAATCAACTTCTTATTTTAAAGTTTCTTCCACTCATGATTGGCTACTTCTCATTATCTGTCCCATCTGGACTAACAATTTACTGGTTTATAAACAATGTCCTGAGCACAGCTCAACAAGTATGGTTGCGAAAATTGGGAGGTGCAAAGCCTGTTGTGAATGAAAATGCTGGTGGGATTATTACTGCAGGACGTGCTAAAAGATCAGATTCGCAGCTAGCAAGGAATGGTGAAAGGTTTAAGCAGTTAAAGGAAGAGGAAAAGAAGAAAAAGGTAAGCAAGGCACTGCCAGTGGAAGAAGTTCAGTCACTGGCTTCTGTTTCTGCTTCTGATGATGGCTCAGATACAGAAAGTGACAATAAGGGACAGGAAGATGCAGAAGAAGCATACGCTTCTAAAGTTGGCGAAGAGGTTCAAAATTATTCTAGGGAAAGAAGAAGCAAGCGTTCGAAGCGGAAGCGTGCTGTATAA >Glyma12g06920.2 sequence type=CDS gene model=Glyma12g06920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGAAAACGCTCATTTCGTCTCCATCGTTCATCGGCACGCCGCTCCCCTCGCTCCCTCGCCACCACCTCCCCCACCGCACCAGGTTTGTCACTACCAAAGTCCACGTCAGCCTCCATGAAATTCCCCCTATTCAATCCTTAAGCCACTCCATTGACTTCGCCGGAATCGTTACCAGAGCCGAAGGCCTTCTCTACACGCTCGCCGATGCCGCAGTTGCGGCGGACCCTGCGGTTGCAGCGGACACTGCGGCTTCCACCACCGATGCTGCCGTACAGAAGAGCGGAGGTTGGTTCGGCTTCATCTCCGAAGCTATGGAGTTCGTTCTCAAGGTGTTGAAGGATGGTCTTTCTGCCGTGCATGTCCCTTATGCATATGGATTTGCTATCATATTGCTCACTGTTATAGTTAAGGCAGCGACGCTTCCCCTGACAAAGCAACAGGTTGAATCTACATTGGCTATGCAAAATCTTCAACCAAAAATTAAGGCCATTCAAGATAGATATGCTGGCAATCAAGAAAGAATACAACTTGAGACGTCAAGGCTATATCGGCAGGCTGGGGTTAACCCACTGGCAGGTTGTTTACCAACTTTGGCTACAATTCCAGTCTGGATTGGTCTCTACCAAGCTTTATCAAATGTGGCAAATGAGGGACTGCTAACCGAAGGTTTTCTTTGGATCCCCTCTTTGGGTGGTCCTACTACCATTGCTGCTAGACAAAGTGGAGCTGGAATCTCTTGGCTTTTTCCATTTGTGGACGGACATCCACCTTTGGGTTGGCAAGATACTGCAGCATATCTTGTTTTACCTATTCTTCTTGTCGTTTCTCAATACGTTTCAATGGAAATCATGAAACCACCTCAGACAGATCCTTCTCAAAAGAATCAACTTCTTATTTTAAAGTTTCTTCCACTCATGATTGGCTACTTCTCATTATCTGTCCCATCTGGACTAACAATTTACTGGTTTATAAACAATGTCCTGAGCACAGCTCAACAAGTATGGTTGCGAAAATTGGGAGGTGCAAAGCCTGTTGTGAATGAAAATGCTGGTGGGATTATTACTGCAGGACGTGCTAAAAGATCAGATTCGCAGCTAGCAAGGAATGGTGAAAGGTTTAAGCAGTTAAAGGAAGAGGAAAAGAAGAAAAAGGTAAGCAAGGCACTGCCAGTGGAAGAAGTTCAGTCACTGGCTTCTGTTTCTGCTTCTGATGATGGCTCAGATACAGAAAGTGACAATAAGGAAGATGCAGAAGAAGCATACGCTTCTAAAGTTGGCGAAGAGGTTCAAAATTATTCTAGGGAAAGAAGAAGCAAGCGTTCGAAGCGGAAGCGTGCTGTATAA
>Glyma12g06920.1 sequence type=predicted peptide gene model=Glyma12g06920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAKTLISSPSFIGTPLPSLPRHHLPHRTRFVTTKVHVSLHEIPPIQSLSHSIDFAGIVTRAEGLLYTLADAAVAADPAVAADTAASTTDAAVQKSGGWFGFISEAMEFVLKVLKDGLSAVHVPYAYGFAIILLTVIVKAATLPLTKQQVESTLAMQNLQPKIKAIQDRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFLWIPSLGGPTTIAARQSGAGISWLFPFVDGHPPLGWQDTAAYLVLPILLVVSQYVSMEIMKPPQTDPSQKNQLLILKFLPLMIGYFSLSVPSGLTIYWFINNVLSTAQQVWLRKLGGAKPVVNENAGGIITAGRAKRSDSQLARNGERFKQLKEEEKKKKVSKALPVEEVQSLASVSASDDGSDTESDNKGQEDAEEAYASKVGEEVQNYSRERRSKRSKRKRAV* >Glyma12g06920.2 sequence type=predicted peptide gene model=Glyma12g06920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAKTLISSPSFIGTPLPSLPRHHLPHRTRFVTTKVHVSLHEIPPIQSLSHSIDFAGIVTRAEGLLYTLADAAVAADPAVAADTAASTTDAAVQKSGGWFGFISEAMEFVLKVLKDGLSAVHVPYAYGFAIILLTVIVKAATLPLTKQQVESTLAMQNLQPKIKAIQDRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFLWIPSLGGPTTIAARQSGAGISWLFPFVDGHPPLGWQDTAAYLVLPILLVVSQYVSMEIMKPPQTDPSQKNQLLILKFLPLMIGYFSLSVPSGLTIYWFINNVLSTAQQVWLRKLGGAKPVVNENAGGIITAGRAKRSDSQLARNGERFKQLKEEEKKKKVSKALPVEEVQSLASVSASDDGSDTESDNKEDAEEAYASKVGEEVQNYSRERRSKRSKRKRAV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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