Glyma12g06880 - SoyBase

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Report for Sequence Feature Glyma12g06880

Feature Type:	gene_model
Chromosome:	Gm12
Start:	4679868
stop:	4681949
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g06880

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G55370	AT	Annotation by Michelle Graham. TAIR10: OBF-binding protein 3 \| chr3:20527198-20528876 FORWARD LENGTH=323	SoyBase	E_val: 1.00E-60	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009640	GO-bp	Annotation by Michelle Graham. GO Biological Process: photomorphogenesis	SoyBase	N/A	ISS
GO:0045893	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
PF02701	PFAM	Dof domain, zinc finger	JGI		ISS
UniRef100_B9GJP7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: F-box family protein n=1 Tax=Populus trichocarpa RepID=B9GJP7_POPTR	SoyBase	E_val: 1.00E-96	ISS
UniRef100_I1LQR2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1LQR2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma12g06880

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g06880

Paralog	Evidence	Comments
Glyma11g14920	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g06880 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g063800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g06880

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma12g06880

Limit To All Plant Sequences

>Glyma12g06880.2   sequence type=CDS   gene model=Glyma12g06880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTTTCTCCTCTATTCCAGTCTTTGTAGATCCTCCCAATTGGCAGCAGCAACCAAACCATCCTCAAGCAAGTAATAATGGTGGTGATAACTCCCAGCTTCTTCCACCTTTGCCACCACATCAACCTCATGTGGGAGGTTCTGTTGGTTCAATCAGGCCAGGTTCCATGGCAGATCGAGCTAGGCTAGCTAAGATACCACCACCAGAAGCAGCTCTCAAGTGTCCACGTTGCGATTCCACCAACACTAAATTTTGCTACTTCAACAACTATAGCCTCTCTCAACCACGCCATTTCTGTAAGACTTGTAGGCGCTATTGGACAAGTGGGGGTGCTCTAAGAAACGTTCCTGTGGGTGGAGGGTGCCGTAGGAACAAGAAGAACAAAAGGAGTCGCTCTAAGTCTCCTGCCTCATCGGAGAAACAAACACTTTCTGGTTCCACGAGTGCAACACCCTCTGGTGGAACCACTCATGAACTAGTTGGTCAGTTGCCACAGCCACCGAACCTTCCCTTCATGGCATCTCTTCAGAACCTTAACCGTTATGCTGTTGGAAACATGGGTCTCGGGTTGCGTGAGATTCACGGACAGAACGAGAACATGGGGTTTCAGATTGGTAATTCTTCAGCTGCTGGTGGAGGAATGGATCAGTGGCGCATACAACAGGTTCCTTTCTTGAATGGTTTTGAATCAACTTCTGCTGGTTCGTACCCTTTTCAAAATGAAGGGATTGAAACACCTTCTGGTTTTGGTGGAGACATAGCAACGAATTCTAGGGTTTCTCAGATGCCATCGGTTAAAATGGAAGAAAGTGGAGCTTTGAATTTGTCAAGATCAACACTCAATGTTTCAGAAAATAACCAATACTATTCATGGACTGATATGTCAGGTCTTGCTTCTTCTTCCGCTACTCATCTCTTGTAA

Predicted protein sequences of Glyma12g06880

Limit To All Plant Sequences

>Glyma12g06880.2   sequence type=predicted peptide   gene model=Glyma12g06880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVFSSIPVFVDPPNWQQQPNHPQASNNGGDNSQLLPPLPPHQPHVGGSVGSIRPGSMADRARLAKIPPPEAALKCPRCDSTNTKFCYFNNYSLSQPRHFCKTCRRYWTSGGALRNVPVGGGCRRNKKNKRSRSKSPASSEKQTLSGSTSATPSGGTTHELVGQLPQPPNLPFMASLQNLNRYAVGNMGLGLREIHGQNENMGFQIGNSSAAGGGMDQWRIQQVPFLNGFESTSAGSYPFQNEGIETPSGFGGDIATNSRVSQMPSVKMEESGALNLSRSTLNVSENNQYYSWTDMSGLASSSATHLL*

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