Glyma12g06730 - SoyBase

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Report for Sequence Feature Glyma12g06730

Feature Type:	gene_model
Chromosome:	Gm12
Start:	4591541
stop:	4594075
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g06730

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G39700	AT	Annotation by Michelle Graham. TAIR10: expansin A4 \| chr2:16544246-16545434 REVERSE LENGTH=257	SoyBase	E_val: 5.00E-160	ISS
GO:0006949	GO-bp	Annotation by Michelle Graham. GO Biological Process: syncytium formation	SoyBase	N/A	ISS
GO:0009664	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall organization	SoyBase	N/A	ISS
GO:0009826	GO-bp	Annotation by Michelle Graham. GO Biological Process: unidimensional cell growth	SoyBase	N/A	ISS
GO:0009828	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall loosening	SoyBase	N/A	ISS
GO:0009831	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall modification involved in multidimensional cell growth	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0009505	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
PF01357	PFAM	Pollen allergen	JGI		ISS
PF03330	PFAM	Rare lipoprotein A (RlpA)-like double-psi beta-barrel	JGI		ISS
UniRef100_G9FTF9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Expansin A5a n=1 Tax=Glycine max RepID=G9FTF9_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_G9FTF9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Expansin A5a n=1 Tax=Glycine max RepID=G9FTF9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma12g06730

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma12g06730 not represented in the dataset	Glyma12g06730 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g06730

Paralog	Evidence	Comments
Glyma11g14800	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g06730 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g062700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g06730

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma12g06730

Limit To All Plant Sequences

>Glyma12g06730.2   sequence type=transcript   gene model=Glyma12g06730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCCACCCTCTCCTACTGACCAATCACCTCTAATCCCCGAATCTCCCAGAGAAACAAAGAAAAGAAGAAAATGGCTGTGGCCAACAATGTGCTTTGCATTTTCTTCATTATCTCCTTAACATGTATGGTTCAAGCTCGAATCCCAGGGGTTTACTCTGCTGGTGCATGGCAAAGTGCCCACGCCACCTTCTACGGAGGCTCCGATGCTTCCGGCACCATGGGTTTGAACTAACTCACCAACACCTTCGTCATTGTCACTAGACCAAACTTATATCTCATTTGGTGTCACCTAGAATGTAGCATGTACTTAGTACTCACAATGTGCCTATTTTTAAGGAGATTTTATTTTGCAGGGGGAGCGTGTGGGTATGGAAACCTGTACAGCCAGGGTTATGGTGTGAACACGGCGGCATTGAGCACGGCGCTCTTCAACAGCGGGCTTAGCTGCGGTGCGTGTTTTGAGATAAAGTGCGCAAACGACAGGCAGTGGTGCCACTCCGGCAGTCCTTCCATCTTCATCACCGCCACCAACTTTTGCCCTCCCAACTTCGCTCTTCCTAACGACAATGGCGGCTGGTGCAACCCTCCTCGCCCTCACTTCGACCTCGCCATGCCCATGTTCCTTAAAATCGCCGAATACCGCGCCGGAATCGTCCCCGTCGCCTATCGCCGGGTGCCATGCAGAAAGCACGGAGGGATAAGGTTCACGATAAACGGATTCCGTTACTTCAACCTGGTGCTGATTAGCAACGTAGCGGGTGCGGGTGATATCGTGCGCACGTACGTGAAGGGCACCCGAACCGGGTGGATGCCAATGAGCCGTAACTGGGGTCAGAACTGGCAGTCAAACGCGGTTTTGGTGGGCCAGGCCCTGTCCTTTCGTGTCACCGGCAGCGACCGCCGCACCTCAACCTCGTGGAACATCGCTCCACCCAATTGGCAATTCGGTCAAACTTTCACCGGAAAGAATTTCCGTGTCTGAAAAAACCCTAATCATAATCACCACCCATGTCATCAACATCAATGACATGCTTATGTATATTTTTTTATTGTAATCCTTTTTTTTTCAAGGTTCCCGCCTTTTAATTACTTATTCCTAGATGGTCGTTTGACTGGATAGTGAGTGACAACTTCTTAATTGTGACTTTAGATGTTGTTGGGTTTTAGTGTTTTTTTTTTCTTTTCTGATTGGGTGGGTTTTATAATTATAGTTGGGGTGCGTGAAGTTGTATTTTAATTTGTACCGTAGACCAAAGGGGCGTAATAGGAATGGAAAAGGCGAAAGGGAGAGCGAAAGGATGAGAGAAAGTGTTGTAGGTAACGCTGAAGTGGCTTAAGCAAAATGGTAGCCCGCAGCTAATTTGCGCTTTTTATTATAGAATCATGGTGTTATATATATTATTAATGGTATAAATTTGTTCTATGAATTTAACTGC

Coding sequences of Glyma12g06730

Limit To All Plant Sequences

>Glyma12g06730.1   sequence type=CDS   gene model=Glyma12g06730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGTGGCCAACAATGTGCTTTGCATTTTCTTCATTATCTCCTTAACATGTATGGTTCAAGCTCGAATCCCAGGGGTTTACTCTGCTGGTGCATGGCAAAGTGCCCACGCCACCTTCTACGGAGGCTCCGATGCTTCCGGCACCATGGGGGGAGCGTGTGGGTATGGAAACCTGTACAGCCAGGGTTATGGTGTGAACACGGCGGCATTGAGCACGGCGCTCTTCAACAGCGGGCTTAGCTGCGGTGCGTGTTTTGAGATAAAGTGCGCAAACGACAGGCAGTGGTGCCACTCCGGCAGTCCTTCCATCTTCATCACCGCCACCAACTTTTGCCCTCCCAACTTCGCTCTTCCTAACGACAATGGCGGCTGGTGCAACCCTCCTCGCCCTCACTTCGACCTCGCCATGCCCATGTTCCTTAAAATCGCCGAATACCGCGCCGGAATCGTCCCCGTCGCCTATCGCCGGGTGCCATGCAGAAAGCACGGAGGGATAAGGTTCACGATAAACGGATTCCGTTACTTCAACCTGGTGCTGATTAGCAACGTAGCGGGTGCGGGTGATATCGTGCGCACGTACGTGAAGGGCACCCGAACCGGGTGGATGCCAATGAGCCGTAACTGGGGTCAGAACTGGCAGTCAAACGCGGTTTTGGTGGGCCAGGCCCTGTCCTTTCGTGTCACCGGCAGCGACCGCCGCACCTCAACCTCGTGGAACATCGCTCCACCCAATTGGCAATTCGGTCAAACTTTCACCGGAAAGAATTTCCGTGTCTGA

>Glyma12g06730.2   sequence type=CDS   gene model=Glyma12g06730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTACTTAGTACTCACAATGTGCCTATTTTTAAGGAGATTTTATTTTGCAGGGGGAGCGTGTGGGTATGGAAACCTGTACAGCCAGGGTTATGGTGTGAACACGGCGGCATTGAGCACGGCGCTCTTCAACAGCGGGCTTAGCTGCGGTGCGTGTTTTGAGATAAAGTGCGCAAACGACAGGCAGTGGTGCCACTCCGGCAGTCCTTCCATCTTCATCACCGCCACCAACTTTTGCCCTCCCAACTTCGCTCTTCCTAACGACAATGGCGGCTGGTGCAACCCTCCTCGCCCTCACTTCGACCTCGCCATGCCCATGTTCCTTAAAATCGCCGAATACCGCGCCGGAATCGTCCCCGTCGCCTATCGCCGGGTGCCATGCAGAAAGCACGGAGGGATAAGGTTCACGATAAACGGATTCCGTTACTTCAACCTGGTGCTGATTAGCAACGTAGCGGGTGCGGGTGATATCGTGCGCACGTACGTGAAGGGCACCCGAACCGGGTGGATGCCAATGAGCCGTAACTGGGGTCAGAACTGGCAGTCAAACGCGGTTTTGGTGGGCCAGGCCCTGTCCTTTCGTGTCACCGGCAGCGACCGCCGCACCTCAACCTCGTGGAACATCGCTCCACCCAATTGGCAATTCGGTCAAACTTTCACCGGAAAGAATTTCCGTGTCTGA

Predicted protein sequences of Glyma12g06730

Limit To All Plant Sequences

>Glyma12g06730.1   sequence type=predicted peptide   gene model=Glyma12g06730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAVANNVLCIFFIISLTCMVQARIPGVYSAGAWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNSGLSCGACFEIKCANDRQWCHSGSPSIFITATNFCPPNFALPNDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAYRRVPCRKHGGIRFTINGFRYFNLVLISNVAGAGDIVRTYVKGTRTGWMPMSRNWGQNWQSNAVLVGQALSFRVTGSDRRTSTSWNIAPPNWQFGQTFTGKNFRV*

>Glyma12g06730.2   sequence type=predicted peptide   gene model=Glyma12g06730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYLVLTMCLFLRRFYFAGGACGYGNLYSQGYGVNTAALSTALFNSGLSCGACFEIKCANDRQWCHSGSPSIFITATNFCPPNFALPNDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAYRRVPCRKHGGIRFTINGFRYFNLVLISNVAGAGDIVRTYVKGTRTGWMPMSRNWGQNWQSNAVLVGQALSFRVTGSDRRTSTSWNIAPPNWQFGQTFTGKNFRV*

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