|
A newer version of this gene model can be found here:
Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
---|---|---|---|---|---|
ATCG00490 | AT | Annotation by Michelle Graham. TAIR10: ribulose-bisphosphate carboxylases | chrC:54958-56397 FORWARD LENGTH=479 | SoyBase | E_val: 9.00E-75 | ISS |
GO:0006091 | GO-bp | Annotation by Michelle Graham. GO Biological Process: generation of precursor metabolites and energy | SoyBase | N/A | ISS |
GO:0006354 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA-dependent transcription, elongation | SoyBase | N/A | ISS |
GO:0009737 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus | SoyBase | N/A | ISS |
GO:0015977 | GO-bp | Annotation by Michelle Graham. GO Biological Process: carbon fixation | SoyBase | N/A | ISS |
GO:0015979 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photosynthesis | SoyBase | N/A | ISS |
GO:0018119 | GO-bp | Annotation by Michelle Graham. GO Biological Process: peptidyl-cysteine S-nitrosylation | SoyBase | N/A | ISS |
GO:0046686 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cadmium ion | SoyBase | N/A | ISS |
GO:0005618 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cell wall | SoyBase | N/A | ISS |
GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
GO:0009535 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane | SoyBase | N/A | ISS |
GO:0009536 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plastid | SoyBase | N/A | ISS |
GO:0009570 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma | SoyBase | N/A | ISS |
GO:0009579 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: thylakoid | SoyBase | N/A | ISS |
GO:0009941 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope | SoyBase | N/A | ISS |
GO:0010287 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plastoglobule | SoyBase | N/A | ISS |
GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
GO:0022626 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosolic ribosome | SoyBase | N/A | ISS |
GO:0048046 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: apoplast | SoyBase | N/A | ISS |
GO:0000287 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: magnesium ion binding | SoyBase | N/A | ISS |
GO:0016984 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ribulose-bisphosphate carboxylase activity | SoyBase | N/A | ISS |
PF00016 | PFAM | Ribulose bisphosphate carboxylase large chain, catalytic domain | JGI | ISS | |
UniRef100_B7U9F4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit (Fragment) n=1 Tax=Ulmus minor RepID=B7U9F4_9ROSA | SoyBase | E_val: 7.00E-81 | ISS |
UniRef100_B7U9F4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit (Fragment) n=1 Tax=Ulmus minor RepID=B7U9F4_9ROSA | SoyBase | E_val: 7.00E-81 | ISS |
Glyma12g06606 not represented in the dataset |
Glyma12g06606 not represented in the dataset |
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Corresponding Name | Annotation Version | Evidence | Comments |
---|---|---|---|
Glyma.12g061600 | Wm82.a2.v1 | IGC | As supplied by JGI |
Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma12g06606.1 sequence type=CDS gene model=Glyma12g06606 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GGTACCGTAGTAAGTAAACATGAAGGGAAAAGAGAAATCACTTTAGGTTTTCTTGATTTACTACGTGATGATTTTGTTGAAAAAGATCGAAGTTGTGGTATTTATTTCACTCAGGATTGGATTTCTCTACCAGGTGTATTGTGTGTTGTTTTCGGAGGTATTCACGTTTGGCATATGCCTGCTCAGACCAAGATCTTTGGAGATGATTCTGTACTCCAATTTGGCAGAGGAACTTTAGGACACCTTTGGGGAAATGCCCCAGGTGCTGTAGCTAATCGAGTAGCTCTTGAAGCATATGTGCAGGCTCGAAATGAAGGACATCTTGCTTGTGAAGGTAATGAAATTATCAGTGAGACTAGCAAATGGAGTCCTAAATTAGCTGCTGCTTGTGAAGTATGGAAGAAGATCAAATTTGACTTTGAAGCAATGGATACTTTGTAA
>Glyma12g06606.1 sequence type=predicted peptide gene model=Glyma12g06606 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GTVVSKHEGKREITLGFLDLLRDDFVEKDRSCGIYFTQDWISLPGVLCVVFGGIHVWHMPAQTKIFGDDSVLQFGRGTLGHLWGNAPGAVANRVALEAYVQARNEGHLACEGNEIISETSKWSPKLAAACEVWKKIKFDFEAMDTL*
Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||