Glyma12g06593 - SoyBase

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Report for Sequence Feature Glyma12g06593

Feature Type:	gene_model
Chromosome:	Gm12
Start:	4488552
stop:	4491704
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g06593

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G29080	AT	Annotation by Michelle Graham. TAIR10: FTSH protease 3 \| chr2:12489911-12492999 REVERSE LENGTH=809	SoyBase	E_val: 2.00E-64	ISS
GO:0006508	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteolysis	SoyBase	N/A	ISS
GO:0030163	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein catabolic process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0009535	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0004176	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP-dependent peptidase activity	SoyBase	N/A	ISS
GO:0004222	GO-mf	Annotation by Michelle Graham. GO Molecular Function: metalloendopeptidase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
GO:0016887	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATPase activity	SoyBase	N/A	ISS
GO:0017111	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity	SoyBase	N/A	ISS
PTHR23076	Panther	METALLOPROTEASE M41 FTSH	JGI		ISS
PTHR23076:SF11	Panther	MITOCHONDRIAL RESPIRATORY CHAIN COMPLEXES ASSEMBLY PROTEIN RCA1,AFG3(YEAST)-RELATED	JGI		ISS
PF06480	PFAM	FtsH Extracellular	JGI		ISS
UniRef100_I1LQN8	UniRef	Annotation by Michelle Graham. Best UniRef hit: ATP-dependent zinc metalloprotease FtsH 13 n=1 Tax=Glycine max RepID=I1LQN8_SOYBN	SoyBase	E_val: 2.00E-133	ISS
UniRef100_I1LQN8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: ATP-dependent zinc metalloprotease FtsH 13 n=1 Tax=Glycine max RepID=I1LQN8_SOYBN	SoyBase	E_val: 2.00E-133	ISS

Expression Patterns of Glyma12g06593

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma12g06593 not represented in the dataset	Glyma12g06593 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma12g06593 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g061500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g06593

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma12g06593

Limit To All Plant Sequences

>Glyma12g06593.1   sequence type=CDS   gene model=Glyma12g06593   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGCCCTGGTCCTCGAAACCAGATTTTGTTCTATCCAACGTCGACCACAAAAACAAAAACACCAACATTTTTATCGTTTCACTTGCGAACTAGATTACCTTCTTTTTCTCTTTCTTTCTTTAAATTATTTTTACTTCAATTTAGTTATCAGTTTTCGTACGCTCTCTGTTTCCTCGAAAAGCATGATTTTTTCAAGGATTGCACGCTCCGTTTCGAGTTCGTCTCGCGCTAGAAATTTATTACACGGTGATGGGAGATTGGGAACCCATGTCGGATCGCCACGGACGAATGCGTGTTCTGAAGGAGCCCAAGGGGTATTAGGGTTTGTTAGGGGCTACGTGTCTTCTGCCAGAGCTCTCAGTAATGGCTTCGTTTCCAATTTGCCTGATTTTAAATCTGTTGCAGCAAACCCTACGATTCGCCGATTGTTTTGCAGCAAAGCTCCAAAGAAGGAGAATAACTCGAATGCAAACACAGAGGATAGTGGAAATTTTCAGGAAGCTTTCATGAAGCAAGTTAAATATCTAGTCACCCCATTATTGTTGATGGGGCTATTTCTTACATCCTTTTCGTTTGGTCCTCCTGAACAGAACCAGATTAGCTTTCAGGAGTTTAAAAACAAGCTTTTGGAACCAGGATTAGTAGACCATATTGTTGTCTCAAATAAATCAGTTGCCAAAGTATATGTAAGGAACACTCCCCTCAACCAAACAGATAATGAAGTAGCCCAAGGGACCCAACCTGCAATTGGATCTGGAGGCCAGTATAAATATTATTTCAATATTGGAAGTGTTGAGTCTTTTGAGGAGAAGCTAGAGGAAGCGCAAGAAGCTCTGGGCATTTGCTCTCATGATTTTGTGCCTGTCACATATTCTTTTGAACTGGGGTACCGGGAATGGATTGCGTTGGCTTCAATACTGTTGTTTTTGGGATTTGTCACATATATAAGCTTTTAA

Predicted protein sequences of Glyma12g06593

Limit To All Plant Sequences

>Glyma12g06593.1   sequence type=predicted peptide   gene model=Glyma12g06593   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEALVLETRFCSIQRRPQKQKHQHFYRFTCELDYLLFLFLSLNYFYFNLVISFRTLSVSSKSMIFSRIARSVSSSSRARNLLHGDGRLGTHVGSPRTNACSEGAQGVLGFVRGYVSSARALSNGFVSNLPDFKSVAANPTIRRLFCSKAPKKENNSNANTEDSGNFQEAFMKQVKYLVTPLLLMGLFLTSFSFGPPEQNQISFQEFKNKLLEPGLVDHIVVSNKSVAKVYVRNTPLNQTDNEVAQGTQPAIGSGGQYKYYFNIGSVESFEEKLEEAQEALGICSHDFVPVTYSFELGYREWIALASILLFLGFVTYISF*

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